Gene : Glyma.U032200 G. max Wm82.a2.v1
Defline:  (1 of 7) PTHR11638//PTHR11638:SF106 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  5
Name:  ? Glyma.U032200 Secondary Identifier:  ? PAC:30500028
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U032200 0.5kb upstream 0.5kb upstream 4706 true scaffold_31: 161908-166613 Glycine max
Glyma.U032200 0.5kb upstream 0.5kb upstream 500 false scaffold_31: 161908-162407 Glycine max
Glyma.U032200 0.5kb downstream 0.5kb downstream 4706 true scaffold_31: 162408-167113 Glycine max
Glyma.U032200 0.5kb downstream 0.5kb downstream 500 false scaffold_31: 166614-167113 Glycine max
Glyma.U032200 1.0kb upstream 1.0kb upstream 5206 true scaffold_31: 161408-166613 Glycine max
Glyma.U032200 1.0kb upstream 1.0kb upstream 1000 false scaffold_31: 161408-162407 Glycine max
Glyma.U032200 1.0kb downstream 1.0kb downstream 5206 true scaffold_31: 162408-167613 Glycine max
Glyma.U032200 1.0kb downstream 1.0kb downstream 1000 false scaffold_31: 166614-167613 Glycine max
Glyma.U032200 2.0kb upstream 2.0kb upstream 6206 true scaffold_31: 160408-166613 Glycine max
Glyma.U032200 2.0kb upstream 2.0kb upstream 2000 false scaffold_31: 160408-162407 Glycine max
Glyma.U032200 2.0kb downstream 2.0kb downstream 6206 true scaffold_31: 162408-168613 Glycine max
Glyma.U032200 2.0kb downstream 2.0kb downstream 2000 false scaffold_31: 166614-168613 Glycine max
Glyma.U032200 5.0kb upstream 5.0kb upstream 9206 true scaffold_31: 157408-166613 Glycine max
Glyma.U032200 5.0kb upstream 5.0kb upstream 5000 false scaffold_31: 157408-162407 Glycine max
Glyma.U032200 5.0kb downstream 5.0kb downstream 9206 true scaffold_31: 162408-171613 Glycine max
Glyma.U032200 5.0kb downstream 5.0kb downstream 5000 false scaffold_31: 166614-171613 Glycine max
Glyma.U032200 10.0kb upstream 10.0kb upstream 14206 true scaffold_31: 152408-166613 Glycine max
Glyma.U032200 10.0kb upstream 10.0kb upstream 10000 false scaffold_31: 152408-162407 Glycine max
Glyma.U032200 10.0kb downstream 10.0kb downstream 14206 true scaffold_31: 162408-176613 Glycine max
Glyma.U032200 10.0kb downstream 10.0kb downstream 10000 false scaffold_31: 166614-176613 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309511 5265 Fabidae View MSA
124070007 5270 Rosid View MSA
123743418 5271 Pentapetalae View MSA
122787302 5272 Eudicot View MSA
122049419 5273 Angiosperm View MSA
121351273 5274 Embryophyte View MSA
123382090 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.83365 0.0 5.48911    
cufflinks 2.5402 0.0 7.26902   High
cufflinks 2.34056 0.0 6.74162    
cufflinks 1.95577 0.0 5.77542    
cufflinks 2.35762 0.0 6.83534   High
cufflinks 1.73337 0.0 5.22022   Low
cufflinks 2.13895 0.0 6.28039    
cufflinks 1.92637 0.0 5.7023    
cufflinks 1.92625 0.0 5.71451    
cufflinks 2.303        
cufflinks 1.834        
cufflinks 2.709        
cufflinks 2.537        
cufflinks 2.988        
cufflinks 1.691        
cufflinks 3.55        
cufflinks 0.602       Low
cufflinks 5.093       High
cufflinks 3.568        
cufflinks 3.402        
cufflinks 1.822        
cufflinks 4.044        
cufflinks 3.655        
cufflinks 1.958        
cufflinks 3.424        
cufflinks 1.356       Low

0 Strain