Gene : Glyma.U033300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31057:SF0 - E3 UFM1-PROTEIN LIGASE 1 Genomic Order:  4
Name:  ? Glyma.U033300 Secondary Identifier:  ? PAC:30523503
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Sequence Feature Displayer

Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U033300 0.5kb upstream 0.5kb upstream 10569 true scaffold_32: 61479-72047 Glycine max
Glyma.U033300 0.5kb upstream 0.5kb upstream 500 false scaffold_32: 61479-61978 Glycine max
Glyma.U033300 0.5kb downstream 0.5kb downstream 10569 true scaffold_32: 61979-72547 Glycine max
Glyma.U033300 0.5kb downstream 0.5kb downstream 500 false scaffold_32: 72048-72547 Glycine max
Glyma.U033300 1.0kb upstream 1.0kb upstream 11069 true scaffold_32: 60979-72047 Glycine max
Glyma.U033300 1.0kb upstream 1.0kb upstream 1000 false scaffold_32: 60979-61978 Glycine max
Glyma.U033300 1.0kb downstream 1.0kb downstream 11069 true scaffold_32: 61979-73047 Glycine max
Glyma.U033300 1.0kb downstream 1.0kb downstream 1000 false scaffold_32: 72048-73047 Glycine max
Glyma.U033300 2.0kb upstream 2.0kb upstream 12069 true scaffold_32: 59979-72047 Glycine max
Glyma.U033300 2.0kb upstream 2.0kb upstream 2000 false scaffold_32: 59979-61978 Glycine max
Glyma.U033300 2.0kb downstream 2.0kb downstream 12069 true scaffold_32: 61979-74047 Glycine max
Glyma.U033300 2.0kb downstream 2.0kb downstream 2000 false scaffold_32: 72048-74047 Glycine max
Glyma.U033300 5.0kb upstream 5.0kb upstream 15069 true scaffold_32: 56979-72047 Glycine max
Glyma.U033300 5.0kb upstream 5.0kb upstream 5000 false scaffold_32: 56979-61978 Glycine max
Glyma.U033300 5.0kb downstream 5.0kb downstream 15069 true scaffold_32: 61979-77047 Glycine max
Glyma.U033300 5.0kb downstream 5.0kb downstream 5000 false scaffold_32: 72048-77047 Glycine max
Glyma.U033300 10.0kb upstream 10.0kb upstream 20069 true scaffold_32: 51979-72047 Glycine max
Glyma.U033300 10.0kb upstream 10.0kb upstream 10000 false scaffold_32: 51979-61978 Glycine max
Glyma.U033300 10.0kb downstream 10.0kb downstream 20069 true scaffold_32: 61979-82047 Glycine max
Glyma.U033300 10.0kb downstream 10.0kb downstream 10000 false scaffold_32: 72048-82047 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121691341 5273 Angiosperm View MSA
122237839 5265 Fabidae Singleton cluster - no MSA
123983350 5270 Rosid Singleton cluster - no MSA
123647213 5271 Pentapetalae View MSA
122681208 5272 Eudicot View MSA
120963199 5274 Embryophyte View MSA
123003553 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.6352 0.0 49.3287    
cufflinks 16.0715 0.0 54.5442    
cufflinks 16.6409 0.0 57.1099    
cufflinks 15.3992 0.0 54.5943    
cufflinks 14.6109 0.0 45.9115    
cufflinks 16.4848 0.0 56.3331    
cufflinks 19.6976 0.0 68.3195   High
cufflinks 13.592 0.0 46.0935   Low
cufflinks 14.7136 0.0 49.7697    
cufflinks 1.355        
cufflinks 0.748       Low
cufflinks 1.533        
cufflinks 1.569       High
cufflinks 1.662       High
cufflinks 0.947        
cufflinks 1.335        
cufflinks 0.748       Low
cufflinks 1.486        
cufflinks 1.461        
cufflinks 1.425        
cufflinks 0.912       Low
cufflinks 1.366        
cufflinks 1.2        
cufflinks 0.985        
cufflinks 1.319        
cufflinks 1.028        

0 Strain