Gene : Glyma.U033400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23326:SF3 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 2 Genomic Order:  5
Name:  ? Glyma.U033400 Secondary Identifier:  ? PAC:30523490
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U033400 0.5kb upstream 0.5kb upstream 8529 true scaffold_32: 73492-82020 Glycine max
Glyma.U033400 0.5kb upstream 0.5kb upstream 500 false scaffold_32: 81521-82020 Glycine max
Glyma.U033400 0.5kb downstream 0.5kb downstream 8529 true scaffold_32: 72992-81520 Glycine max
Glyma.U033400 0.5kb downstream 0.5kb downstream 500 false scaffold_32: 72992-73491 Glycine max
Glyma.U033400 1.0kb upstream 1.0kb upstream 9029 true scaffold_32: 73492-82520 Glycine max
Glyma.U033400 1.0kb upstream 1.0kb upstream 1000 false scaffold_32: 81521-82520 Glycine max
Glyma.U033400 1.0kb downstream 1.0kb downstream 9029 true scaffold_32: 72492-81520 Glycine max
Glyma.U033400 1.0kb downstream 1.0kb downstream 1000 false scaffold_32: 72492-73491 Glycine max
Glyma.U033400 2.0kb upstream 2.0kb upstream 10029 true scaffold_32: 73492-83520 Glycine max
Glyma.U033400 2.0kb upstream 2.0kb upstream 2000 false scaffold_32: 81521-83520 Glycine max
Glyma.U033400 2.0kb downstream 2.0kb downstream 10029 true scaffold_32: 71492-81520 Glycine max
Glyma.U033400 2.0kb downstream 2.0kb downstream 2000 false scaffold_32: 71492-73491 Glycine max
Glyma.U033400 5.0kb upstream 5.0kb upstream 13029 true scaffold_32: 73492-86520 Glycine max
Glyma.U033400 5.0kb upstream 5.0kb upstream 5000 false scaffold_32: 81521-86520 Glycine max
Glyma.U033400 5.0kb downstream 5.0kb downstream 13029 true scaffold_32: 68492-81520 Glycine max
Glyma.U033400 5.0kb downstream 5.0kb downstream 5000 false scaffold_32: 68492-73491 Glycine max
Glyma.U033400 10.0kb upstream 10.0kb upstream 18029 true scaffold_32: 73492-91520 Glycine max
Glyma.U033400 10.0kb upstream 10.0kb upstream 10000 false scaffold_32: 81521-91520 Glycine max
Glyma.U033400 10.0kb downstream 10.0kb downstream 18029 true scaffold_32: 63492-81520 Glycine max
Glyma.U033400 10.0kb downstream 10.0kb downstream 10000 false scaffold_32: 63492-73491 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301060 5265 Fabidae View MSA
124067266 5270 Rosid View MSA
123746622 5271 Pentapetalae View MSA
122792157 5272 Eudicot View MSA
122049800 5273 Angiosperm View MSA
121348841 5274 Embryophyte View MSA
123428233 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.9628 0.0 101.788   High
cufflinks 14.7253 0.0 69.6404    
cufflinks 12.1891 0.0 61.9807    
cufflinks 14.3787 0.0 69.0959    
cufflinks 14.4851 0.0 64.8152    
cufflinks 12.1183 0.0 54.482   Low
cufflinks 18.4749 0.0 105.197   High
cufflinks 12.5514 0.0 60.1372    
cufflinks 13.7422 0.0 65.9869    
cufflinks 0.391        
cufflinks 0.354       Low
cufflinks 0.538        
cufflinks 0.569        
cufflinks 0.681       High
cufflinks 0.344       Low
cufflinks 0.458        
cufflinks 0.291       Low
cufflinks 0.587       High
cufflinks 0.609       High
cufflinks 0.425        
cufflinks 0.408        
cufflinks 0.5        
cufflinks 0.547        
cufflinks 0.412        
cufflinks 0.406        
cufflinks 0.353       Low

0 Strain