Gene : Glyma.U033800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11177//PTHR11177:SF186 - CHITINASE Genomic Order:  9
Name:  ? Glyma.U033800 Secondary Identifier:  ? PAC:30523484
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6902 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U033800 0.5kb upstream 0.5kb upstream 1409 true scaffold_32: 126050-127458 Glycine max
Glyma.U033800 0.5kb upstream 0.5kb upstream 500 false scaffold_32: 126959-127458 Glycine max
Glyma.U033800 0.5kb downstream 0.5kb downstream 1409 true scaffold_32: 125550-126958 Glycine max
Glyma.U033800 0.5kb downstream 0.5kb downstream 500 false scaffold_32: 125550-126049 Glycine max
Glyma.U033800 1.0kb upstream 1.0kb upstream 1909 true scaffold_32: 126050-127958 Glycine max
Glyma.U033800 1.0kb upstream 1.0kb upstream 1000 false scaffold_32: 126959-127958 Glycine max
Glyma.U033800 1.0kb downstream 1.0kb downstream 1909 true scaffold_32: 125050-126958 Glycine max
Glyma.U033800 1.0kb downstream 1.0kb downstream 1000 false scaffold_32: 125050-126049 Glycine max
Glyma.U033800 2.0kb upstream 2.0kb upstream 2909 true scaffold_32: 126050-128958 Glycine max
Glyma.U033800 2.0kb upstream 2.0kb upstream 2000 false scaffold_32: 126959-128958 Glycine max
Glyma.U033800 2.0kb downstream 2.0kb downstream 2909 true scaffold_32: 124050-126958 Glycine max
Glyma.U033800 2.0kb downstream 2.0kb downstream 2000 false scaffold_32: 124050-126049 Glycine max
Glyma.U033800 5.0kb upstream 5.0kb upstream 5909 true scaffold_32: 126050-131958 Glycine max
Glyma.U033800 5.0kb upstream 5.0kb upstream 5000 false scaffold_32: 126959-131958 Glycine max
Glyma.U033800 5.0kb downstream 5.0kb downstream 5909 true scaffold_32: 121050-126958 Glycine max
Glyma.U033800 5.0kb downstream 5.0kb downstream 5000 false scaffold_32: 121050-126049 Glycine max
Glyma.U033800 10.0kb upstream 10.0kb upstream 10909 true scaffold_32: 126050-136958 Glycine max
Glyma.U033800 10.0kb upstream 10.0kb upstream 10000 false scaffold_32: 126959-136958 Glycine max
Glyma.U033800 10.0kb downstream 10.0kb downstream 10909 true scaffold_32: 116050-126958 Glycine max
Glyma.U033800 10.0kb downstream 10.0kb downstream 10000 false scaffold_32: 116050-126049 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299909 5265 Fabidae View MSA
124072600 5270 Rosid View MSA
123749602 5271 Pentapetalae View MSA
122797171 5272 Eudicot View MSA
122049953 5273 Angiosperm View MSA
121348698 5274 Embryophyte View MSA
123380978 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.218851 0.0 0.867871 Low  
cufflinks 0.14674 0.0 0.59142 Low  
cufflinks 0.184432 0.0 0.735996    
cufflinks 0.795758 0.0 2.99021   High
cufflinks 0.0523698 0.0 0.224432 Low Low
cufflinks 0.170368 0.0 0.681498 Low  
cufflinks 0.216458 0.0 0.857729 Low  
cufflinks 0.800463 0.0 3.00727   High
cufflinks 0.112        
cufflinks 0.256        
cufflinks 0.123        
cufflinks 0.142        
cufflinks 0.04     Low Low
cufflinks 0.041     Low Low
cufflinks 0.139        
cufflinks 1.004       High
cufflinks 0.28        
cufflinks 0.071     Low  
cufflinks 0.118        
cufflinks 0.231        
cufflinks 0.086     Low  
cufflinks 0.061     Low  
cufflinks 0.662       High
cufflinks 0.146        
cufflinks 1.004       High

0 Strain