Gene : Glyma.U027900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21290//PTHR21290:SF29 - SPHINGOMYELIN SYNTHETASE Genomic Order:  7
Name:  ? Glyma.U027900 Secondary Identifier:  ? PAC:30487106
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U027900 0.5kb upstream 0.5kb upstream 5072 true scaffold_27: 305186-310257 Glycine max
Glyma.U027900 0.5kb upstream 0.5kb upstream 500 false scaffold_27: 309758-310257 Glycine max
Glyma.U027900 0.5kb downstream 0.5kb downstream 5072 true scaffold_27: 304686-309757 Glycine max
Glyma.U027900 0.5kb downstream 0.5kb downstream 500 false scaffold_27: 304686-305185 Glycine max
Glyma.U027900 1.0kb upstream 1.0kb upstream 5572 true scaffold_27: 305186-310757 Glycine max
Glyma.U027900 1.0kb upstream 1.0kb upstream 1000 false scaffold_27: 309758-310757 Glycine max
Glyma.U027900 1.0kb downstream 1.0kb downstream 5572 true scaffold_27: 304186-309757 Glycine max
Glyma.U027900 1.0kb downstream 1.0kb downstream 1000 false scaffold_27: 304186-305185 Glycine max
Glyma.U027900 2.0kb upstream 2.0kb upstream 6572 true scaffold_27: 305186-311757 Glycine max
Glyma.U027900 2.0kb upstream 2.0kb upstream 2000 false scaffold_27: 309758-311757 Glycine max
Glyma.U027900 2.0kb downstream 2.0kb downstream 6572 true scaffold_27: 303186-309757 Glycine max
Glyma.U027900 2.0kb downstream 2.0kb downstream 2000 false scaffold_27: 303186-305185 Glycine max
Glyma.U027900 5.0kb upstream 5.0kb upstream 9572 true scaffold_27: 305186-314757 Glycine max
Glyma.U027900 5.0kb upstream 5.0kb upstream 5000 false scaffold_27: 309758-314757 Glycine max
Glyma.U027900 5.0kb downstream 5.0kb downstream 9572 true scaffold_27: 300186-309757 Glycine max
Glyma.U027900 5.0kb downstream 5.0kb downstream 5000 false scaffold_27: 300186-305185 Glycine max
Glyma.U027900 10.0kb upstream 10.0kb upstream 14572 true scaffold_27: 305186-319757 Glycine max
Glyma.U027900 10.0kb upstream 10.0kb upstream 10000 false scaffold_27: 309758-319757 Glycine max
Glyma.U027900 10.0kb downstream 10.0kb downstream 14572 true scaffold_27: 295186-309757 Glycine max
Glyma.U027900 10.0kb downstream 10.0kb downstream 10000 false scaffold_27: 295186-305185 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306014 5265 Fabidae View MSA
124064547 5270 Rosid View MSA
123744784 5271 Pentapetalae View MSA
122788943 5272 Eudicot View MSA
122046269 5273 Angiosperm View MSA
121346433 5274 Embryophyte View MSA
123427335 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.4079 0.0 28.3037   Low
cufflinks 13.4153 0.0 36.0351    
cufflinks 14.3597 0.0 38.4582    
cufflinks 16.2108 0.0 43.3126    
cufflinks 23.3064 0.0 62.2916 High  
cufflinks 55.0322 0.0 156.16 High High
cufflinks 17.9076 0.0 47.7919    
cufflinks 29.4052 0.0 79.208 High  
cufflinks 39.4592 0.0 108.229 High High
cufflinks 8.05     High  
cufflinks 14.169     High High
cufflinks 5.47        
cufflinks 8.121     High  
cufflinks 5.254        
cufflinks 17.677     High High
cufflinks 4.764        
cufflinks 18.264     High High
cufflinks 6.795        
cufflinks 4.423        
cufflinks 2.948       Low
cufflinks 11.653     High  
cufflinks 3.594       Low
cufflinks 3.708       Low
cufflinks 12.138     High  
cufflinks 3.223       Low
cufflinks 13.643     High High

0 Strain