Gene : Glyma.U039300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11771:SF53 - LINOLEATE 9S-LIPOXYGENASE 5, CHLOROPLASTIC Genomic Order:  1
Name:  ? Glyma.U039300 Secondary Identifier:  ? PAC:30506143
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U039300 0.5kb upstream 0.5kb upstream 6465 true scaffold_442: 4442-10906 Glycine max
Glyma.U039300 0.5kb upstream 0.5kb upstream 500 false scaffold_442: 4442-4941 Glycine max
Glyma.U039300 0.5kb downstream 0.5kb downstream 5993 true scaffold_442: 4942-10934 Glycine max
Glyma.U039300 0.5kb downstream 0.5kb downstream 28 false scaffold_442: 10907-10934 Glycine max
Glyma.U039300 1.0kb upstream 1.0kb upstream 6965 true scaffold_442: 3942-10906 Glycine max
Glyma.U039300 1.0kb upstream 1.0kb upstream 1000 false scaffold_442: 3942-4941 Glycine max
Glyma.U039300 1.0kb downstream 1.0kb downstream 5993 true scaffold_442: 4942-10934 Glycine max
Glyma.U039300 1.0kb downstream 1.0kb downstream 28 false scaffold_442: 10907-10934 Glycine max
Glyma.U039300 2.0kb upstream 2.0kb upstream 7965 true scaffold_442: 2942-10906 Glycine max
Glyma.U039300 2.0kb upstream 2.0kb upstream 2000 false scaffold_442: 2942-4941 Glycine max
Glyma.U039300 2.0kb downstream 2.0kb downstream 5993 true scaffold_442: 4942-10934 Glycine max
Glyma.U039300 2.0kb downstream 2.0kb downstream 28 false scaffold_442: 10907-10934 Glycine max
Glyma.U039300 5.0kb upstream 5.0kb upstream 10906 true scaffold_442: 1-10906 Glycine max
Glyma.U039300 5.0kb upstream 5.0kb upstream 4941 false scaffold_442: 1-4941 Glycine max
Glyma.U039300 5.0kb downstream 5.0kb downstream 5993 true scaffold_442: 4942-10934 Glycine max
Glyma.U039300 5.0kb downstream 5.0kb downstream 28 false scaffold_442: 10907-10934 Glycine max
Glyma.U039300 10.0kb upstream 10.0kb upstream 10906 true scaffold_442: 1-10906 Glycine max
Glyma.U039300 10.0kb upstream 10.0kb upstream 4941 false scaffold_442: 1-4941 Glycine max
Glyma.U039300 10.0kb downstream 10.0kb downstream 5993 true scaffold_442: 4942-10934 Glycine max
Glyma.U039300 10.0kb downstream 10.0kb downstream 28 false scaffold_442: 10907-10934 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122242049 5265 Fabidae Singleton cluster - no MSA
124052352 5270 Rosid View MSA
123750052 5271 Pentapetalae View MSA
122773445 5272 Eudicot View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.435096 0.0 2.12959   Low
cufflinks 7.14282 0.0 31.0936    
cufflinks 3.89118 0.0 15.5132    
cufflinks 20.0849 0.0 75.8008 High High
cufflinks 3.38934 0.0 20.9512    
cufflinks 3.65735 0.0 17.7526    
cufflinks 0.232044 0.0 1.12998   Low
cufflinks 1.09343 0.0 7.30684    
cufflinks 3.93659 0.0 23.7161    
cufflinks 0.246        
cufflinks 0.365        
cufflinks 0.593        
cufflinks 0.714       High
cufflinks 0.141        
cufflinks 0.155        
cufflinks 0.053     Low Low
cufflinks 0.749       High
cufflinks 0.195        
cufflinks 1.765       High
cufflinks 0.058     Low Low
cufflinks 0.503        
cufflinks 0.062     Low Low
cufflinks 0.104        
cufflinks 0.297        
cufflinks 0.041     Low Low
cufflinks 0.572        

0 Strain