Gene : Sevir.5G471500 S. viridis v2.1
Defline:  (1 of 1) PTHR11851//PTHR11851:SF141 - METALLOPROTEASE // SUBFAMILY NOT NAMED Genomic Order:  5110
Name:  ? Sevir.5G471500 Secondary Identifier:  ? PAC:40635867
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY-3781 Setaria viridis pathologic  
Sviridis PWY-7279 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G471500 0.5kb upstream 0.5kb upstream 4666 true Chr_05: 46410684-46415349 Setaria viridis
Sevir.5G471500 0.5kb upstream 0.5kb upstream 500 false Chr_05: 46410684-46411183 Setaria viridis
Sevir.5G471500 0.5kb downstream 0.5kb downstream 4666 true Chr_05: 46411184-46415849 Setaria viridis
Sevir.5G471500 0.5kb downstream 0.5kb downstream 500 false Chr_05: 46415350-46415849 Setaria viridis
Sevir.5G471500 1.0kb upstream 1.0kb upstream 5166 true Chr_05: 46410184-46415349 Setaria viridis
Sevir.5G471500 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 46410184-46411183 Setaria viridis
Sevir.5G471500 1.0kb downstream 1.0kb downstream 5166 true Chr_05: 46411184-46416349 Setaria viridis
Sevir.5G471500 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 46415350-46416349 Setaria viridis
Sevir.5G471500 2.0kb upstream 2.0kb upstream 6166 true Chr_05: 46409184-46415349 Setaria viridis
Sevir.5G471500 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 46409184-46411183 Setaria viridis
Sevir.5G471500 2.0kb downstream 2.0kb downstream 6166 true Chr_05: 46411184-46417349 Setaria viridis
Sevir.5G471500 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 46415350-46417349 Setaria viridis
Sevir.5G471500 5.0kb upstream 5.0kb upstream 9166 true Chr_05: 46406184-46415349 Setaria viridis
Sevir.5G471500 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 46406184-46411183 Setaria viridis
Sevir.5G471500 5.0kb downstream 5.0kb downstream 9166 true Chr_05: 46411184-46420349 Setaria viridis
Sevir.5G471500 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 46415350-46420349 Setaria viridis
Sevir.5G471500 10.0kb upstream 10.0kb upstream 14166 true Chr_05: 46401184-46415349 Setaria viridis
Sevir.5G471500 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 46401184-46411183 Setaria viridis
Sevir.5G471500 10.0kb downstream 10.0kb downstream 14166 true Chr_05: 46411184-46425349 Setaria viridis
Sevir.5G471500 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 46415350-46425349 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187396 5267 Panicoideae View MSA
124577730 5269 Grass View MSA
122050410 5273 Angiosperm View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain