Gene : Sevir.5G318700 S. viridis v2.1
Defline:  (1 of 3) K17913 - carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase (CCD8) Genomic Order:  3444
Name:  ? Sevir.5G318700 Secondary Identifier:  ? PAC:40631789
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY-7101 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G318700 0.5kb upstream 0.5kb upstream 4363 true Chr_05: 36230404-36234766 Setaria viridis
Sevir.5G318700 0.5kb upstream 0.5kb upstream 500 false Chr_05: 36234267-36234766 Setaria viridis
Sevir.5G318700 0.5kb downstream 0.5kb downstream 4363 true Chr_05: 36229904-36234266 Setaria viridis
Sevir.5G318700 0.5kb downstream 0.5kb downstream 500 false Chr_05: 36229904-36230403 Setaria viridis
Sevir.5G318700 1.0kb upstream 1.0kb upstream 4863 true Chr_05: 36230404-36235266 Setaria viridis
Sevir.5G318700 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 36234267-36235266 Setaria viridis
Sevir.5G318700 1.0kb downstream 1.0kb downstream 4863 true Chr_05: 36229404-36234266 Setaria viridis
Sevir.5G318700 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 36229404-36230403 Setaria viridis
Sevir.5G318700 2.0kb upstream 2.0kb upstream 5863 true Chr_05: 36230404-36236266 Setaria viridis
Sevir.5G318700 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 36234267-36236266 Setaria viridis
Sevir.5G318700 2.0kb downstream 2.0kb downstream 5863 true Chr_05: 36228404-36234266 Setaria viridis
Sevir.5G318700 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 36228404-36230403 Setaria viridis
Sevir.5G318700 5.0kb upstream 5.0kb upstream 8863 true Chr_05: 36230404-36239266 Setaria viridis
Sevir.5G318700 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 36234267-36239266 Setaria viridis
Sevir.5G318700 5.0kb downstream 5.0kb downstream 8863 true Chr_05: 36225404-36234266 Setaria viridis
Sevir.5G318700 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 36225404-36230403 Setaria viridis
Sevir.5G318700 10.0kb upstream 10.0kb upstream 13863 true Chr_05: 36230404-36244266 Setaria viridis
Sevir.5G318700 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 36234267-36244266 Setaria viridis
Sevir.5G318700 10.0kb downstream 10.0kb downstream 13863 true Chr_05: 36220404-36234266 Setaria viridis
Sevir.5G318700 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 36220404-36230403 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185928 5267 Panicoideae View MSA
124587364 5269 Grass View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain