Gene : Sevir.5G211100 S. viridis v2.1
Defline:  (1 of 1) 5.5.1.18 - Lycopene epsilon-cyclase Genomic Order:  2838
Name:  ? Sevir.5G211100 Secondary Identifier:  ? PAC:40632352
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis CAROTENOID-PWY Setaria viridis pathologic  
Sviridis PWY-5175 Setaria viridis pathologic  
Sviridis PWY-5946 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G211100 0.5kb upstream 0.5kb upstream 4742 true Chr_05: 31535410-31540151 Setaria viridis
Sevir.5G211100 0.5kb upstream 0.5kb upstream 500 false Chr_05: 31539652-31540151 Setaria viridis
Sevir.5G211100 0.5kb downstream 0.5kb downstream 4742 true Chr_05: 31534910-31539651 Setaria viridis
Sevir.5G211100 0.5kb downstream 0.5kb downstream 500 false Chr_05: 31534910-31535409 Setaria viridis
Sevir.5G211100 1.0kb upstream 1.0kb upstream 5242 true Chr_05: 31535410-31540651 Setaria viridis
Sevir.5G211100 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 31539652-31540651 Setaria viridis
Sevir.5G211100 1.0kb downstream 1.0kb downstream 5242 true Chr_05: 31534410-31539651 Setaria viridis
Sevir.5G211100 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 31534410-31535409 Setaria viridis
Sevir.5G211100 2.0kb upstream 2.0kb upstream 6242 true Chr_05: 31535410-31541651 Setaria viridis
Sevir.5G211100 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 31539652-31541651 Setaria viridis
Sevir.5G211100 2.0kb downstream 2.0kb downstream 6242 true Chr_05: 31533410-31539651 Setaria viridis
Sevir.5G211100 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 31533410-31535409 Setaria viridis
Sevir.5G211100 5.0kb upstream 5.0kb upstream 9242 true Chr_05: 31535410-31544651 Setaria viridis
Sevir.5G211100 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 31539652-31544651 Setaria viridis
Sevir.5G211100 5.0kb downstream 5.0kb downstream 9242 true Chr_05: 31530410-31539651 Setaria viridis
Sevir.5G211100 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 31530410-31535409 Setaria viridis
Sevir.5G211100 10.0kb upstream 10.0kb upstream 14242 true Chr_05: 31535410-31549651 Setaria viridis
Sevir.5G211100 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 31539652-31549651 Setaria viridis
Sevir.5G211100 10.0kb downstream 10.0kb downstream 14242 true Chr_05: 31525410-31539651 Setaria viridis
Sevir.5G211100 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 31525410-31535409 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192345 5267 Panicoideae View MSA
124575258 5269 Grass View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain