Gene : Sevir.5G172200 S. viridis v2.1
Defline:  (1 of 1) PTHR21089//PTHR21089:SF11 - SHIKIMATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  1875
Name:  ? Sevir.5G172200 Secondary Identifier:  ? PAC:40630607
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis ARO-PWY Setaria viridis pathologic  
Sviridis PWY-6163 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G172200 0.5kb upstream 0.5kb upstream 15624 true Chr_05: 17285426-17301049 Setaria viridis
Sevir.5G172200 0.5kb upstream 0.5kb upstream 500 false Chr_05: 17285426-17285925 Setaria viridis
Sevir.5G172200 0.5kb downstream 0.5kb downstream 15624 true Chr_05: 17285926-17301549 Setaria viridis
Sevir.5G172200 0.5kb downstream 0.5kb downstream 500 false Chr_05: 17301050-17301549 Setaria viridis
Sevir.5G172200 1.0kb upstream 1.0kb upstream 16124 true Chr_05: 17284926-17301049 Setaria viridis
Sevir.5G172200 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 17284926-17285925 Setaria viridis
Sevir.5G172200 1.0kb downstream 1.0kb downstream 16124 true Chr_05: 17285926-17302049 Setaria viridis
Sevir.5G172200 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 17301050-17302049 Setaria viridis
Sevir.5G172200 2.0kb upstream 2.0kb upstream 17124 true Chr_05: 17283926-17301049 Setaria viridis
Sevir.5G172200 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 17283926-17285925 Setaria viridis
Sevir.5G172200 2.0kb downstream 2.0kb downstream 17124 true Chr_05: 17285926-17303049 Setaria viridis
Sevir.5G172200 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 17301050-17303049 Setaria viridis
Sevir.5G172200 5.0kb upstream 5.0kb upstream 20124 true Chr_05: 17280926-17301049 Setaria viridis
Sevir.5G172200 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 17280926-17285925 Setaria viridis
Sevir.5G172200 5.0kb downstream 5.0kb downstream 20124 true Chr_05: 17285926-17306049 Setaria viridis
Sevir.5G172200 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 17301050-17306049 Setaria viridis
Sevir.5G172200 10.0kb upstream 10.0kb upstream 25124 true Chr_05: 17275926-17301049 Setaria viridis
Sevir.5G172200 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 17275926-17285925 Setaria viridis
Sevir.5G172200 10.0kb downstream 10.0kb downstream 25124 true Chr_05: 17285926-17311049 Setaria viridis
Sevir.5G172200 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 17301050-17311049 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189124 5267 Panicoideae View MSA
124570353 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain