Gene : Sevir.5G028200 S. viridis v2.1
Defline:  (1 of 1) PTHR11735//PTHR11735:SF12 - O-SIALOGLYCOPROTEIN ENDOPEPTIDASE // TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED Genomic Order:  304
Name:  ? Sevir.5G028200 Secondary Identifier:  ? PAC:40629637
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY0-1587 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G028200 0.5kb upstream 0.5kb upstream 7059 true Chr_05: 2074446-2081504 Setaria viridis
Sevir.5G028200 0.5kb upstream 0.5kb upstream 500 false Chr_05: 2074446-2074945 Setaria viridis
Sevir.5G028200 0.5kb downstream 0.5kb downstream 7059 true Chr_05: 2074946-2082004 Setaria viridis
Sevir.5G028200 0.5kb downstream 0.5kb downstream 500 false Chr_05: 2081505-2082004 Setaria viridis
Sevir.5G028200 1.0kb upstream 1.0kb upstream 7559 true Chr_05: 2073946-2081504 Setaria viridis
Sevir.5G028200 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 2073946-2074945 Setaria viridis
Sevir.5G028200 1.0kb downstream 1.0kb downstream 7559 true Chr_05: 2074946-2082504 Setaria viridis
Sevir.5G028200 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 2081505-2082504 Setaria viridis
Sevir.5G028200 2.0kb upstream 2.0kb upstream 8559 true Chr_05: 2072946-2081504 Setaria viridis
Sevir.5G028200 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 2072946-2074945 Setaria viridis
Sevir.5G028200 2.0kb downstream 2.0kb downstream 8559 true Chr_05: 2074946-2083504 Setaria viridis
Sevir.5G028200 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 2081505-2083504 Setaria viridis
Sevir.5G028200 5.0kb upstream 5.0kb upstream 11559 true Chr_05: 2069946-2081504 Setaria viridis
Sevir.5G028200 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 2069946-2074945 Setaria viridis
Sevir.5G028200 5.0kb downstream 5.0kb downstream 11559 true Chr_05: 2074946-2086504 Setaria viridis
Sevir.5G028200 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 2081505-2086504 Setaria viridis
Sevir.5G028200 10.0kb upstream 10.0kb upstream 16559 true Chr_05: 2064946-2081504 Setaria viridis
Sevir.5G028200 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 2064946-2074945 Setaria viridis
Sevir.5G028200 10.0kb downstream 10.0kb downstream 16559 true Chr_05: 2074946-2091504 Setaria viridis
Sevir.5G028200 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 2081505-2091504 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195272 5267 Panicoideae View MSA
124572506 5269 Grass View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain