Gene : Sevir.5G045900 S. viridis v2.1
Defline:  (1 of 2) PTHR10277//PTHR10277:SF41 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  496
Name:  ? Sevir.5G045900 Secondary Identifier:  ? PAC:40629955
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis LEU-DEG2-PWY Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.5G045900 0.5kb upstream 0.5kb upstream 5467 true Chr_05: 3584632-3590098 Setaria viridis
Sevir.5G045900 0.5kb upstream 0.5kb upstream 500 false Chr_05: 3584632-3585131 Setaria viridis
Sevir.5G045900 0.5kb downstream 0.5kb downstream 5467 true Chr_05: 3585132-3590598 Setaria viridis
Sevir.5G045900 0.5kb downstream 0.5kb downstream 500 false Chr_05: 3590099-3590598 Setaria viridis
Sevir.5G045900 1.0kb upstream 1.0kb upstream 5967 true Chr_05: 3584132-3590098 Setaria viridis
Sevir.5G045900 1.0kb upstream 1.0kb upstream 1000 false Chr_05: 3584132-3585131 Setaria viridis
Sevir.5G045900 1.0kb downstream 1.0kb downstream 5967 true Chr_05: 3585132-3591098 Setaria viridis
Sevir.5G045900 1.0kb downstream 1.0kb downstream 1000 false Chr_05: 3590099-3591098 Setaria viridis
Sevir.5G045900 2.0kb upstream 2.0kb upstream 6967 true Chr_05: 3583132-3590098 Setaria viridis
Sevir.5G045900 2.0kb upstream 2.0kb upstream 2000 false Chr_05: 3583132-3585131 Setaria viridis
Sevir.5G045900 2.0kb downstream 2.0kb downstream 6967 true Chr_05: 3585132-3592098 Setaria viridis
Sevir.5G045900 2.0kb downstream 2.0kb downstream 2000 false Chr_05: 3590099-3592098 Setaria viridis
Sevir.5G045900 5.0kb upstream 5.0kb upstream 9967 true Chr_05: 3580132-3590098 Setaria viridis
Sevir.5G045900 5.0kb upstream 5.0kb upstream 5000 false Chr_05: 3580132-3585131 Setaria viridis
Sevir.5G045900 5.0kb downstream 5.0kb downstream 9967 true Chr_05: 3585132-3595098 Setaria viridis
Sevir.5G045900 5.0kb downstream 5.0kb downstream 5000 false Chr_05: 3590099-3595098 Setaria viridis
Sevir.5G045900 10.0kb upstream 10.0kb upstream 14967 true Chr_05: 3575132-3590098 Setaria viridis
Sevir.5G045900 10.0kb upstream 10.0kb upstream 10000 false Chr_05: 3575132-3585131 Setaria viridis
Sevir.5G045900 10.0kb downstream 10.0kb downstream 14967 true Chr_05: 3585132-3600098 Setaria viridis
Sevir.5G045900 10.0kb downstream 10.0kb downstream 10000 false Chr_05: 3590099-3600098 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195839 5267 Panicoideae View MSA
124575299 5269 Grass View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain