Gene : Sevir.1G277400 S. viridis v2.1
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  3054
Name:  ? Sevir.1G277400 Secondary Identifier:  ? PAC:40604556
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY-7560 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.1G277400 0.5kb upstream 0.5kb upstream 2473 true Chr_01: 34193274-34195746 Setaria viridis
Sevir.1G277400 0.5kb upstream 0.5kb upstream 500 false Chr_01: 34195247-34195746 Setaria viridis
Sevir.1G277400 0.5kb downstream 0.5kb downstream 2473 true Chr_01: 34192774-34195246 Setaria viridis
Sevir.1G277400 0.5kb downstream 0.5kb downstream 500 false Chr_01: 34192774-34193273 Setaria viridis
Sevir.1G277400 1.0kb upstream 1.0kb upstream 2973 true Chr_01: 34193274-34196246 Setaria viridis
Sevir.1G277400 1.0kb upstream 1.0kb upstream 1000 false Chr_01: 34195247-34196246 Setaria viridis
Sevir.1G277400 1.0kb downstream 1.0kb downstream 2973 true Chr_01: 34192274-34195246 Setaria viridis
Sevir.1G277400 1.0kb downstream 1.0kb downstream 1000 false Chr_01: 34192274-34193273 Setaria viridis
Sevir.1G277400 2.0kb upstream 2.0kb upstream 3973 true Chr_01: 34193274-34197246 Setaria viridis
Sevir.1G277400 2.0kb upstream 2.0kb upstream 2000 false Chr_01: 34195247-34197246 Setaria viridis
Sevir.1G277400 2.0kb downstream 2.0kb downstream 3973 true Chr_01: 34191274-34195246 Setaria viridis
Sevir.1G277400 2.0kb downstream 2.0kb downstream 2000 false Chr_01: 34191274-34193273 Setaria viridis
Sevir.1G277400 5.0kb upstream 5.0kb upstream 6973 true Chr_01: 34193274-34200246 Setaria viridis
Sevir.1G277400 5.0kb upstream 5.0kb upstream 5000 false Chr_01: 34195247-34200246 Setaria viridis
Sevir.1G277400 5.0kb downstream 5.0kb downstream 6973 true Chr_01: 34188274-34195246 Setaria viridis
Sevir.1G277400 5.0kb downstream 5.0kb downstream 5000 false Chr_01: 34188274-34193273 Setaria viridis
Sevir.1G277400 10.0kb upstream 10.0kb upstream 11973 true Chr_01: 34193274-34205246 Setaria viridis
Sevir.1G277400 10.0kb upstream 10.0kb upstream 10000 false Chr_01: 34195247-34205246 Setaria viridis
Sevir.1G277400 10.0kb downstream 10.0kb downstream 11973 true Chr_01: 34183274-34195246 Setaria viridis
Sevir.1G277400 10.0kb downstream 10.0kb downstream 10000 false Chr_01: 34183274-34193273 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192729 5267 Panicoideae View MSA
124578678 5269 Grass View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain