Gene : Sevir.1G296300 S. viridis v2.1
Defline:  (1 of 1) K01956 - carbamoyl-phosphate synthase small subunit (carA, CPA1) Genomic Order:  3261
Name:  ? Sevir.1G296300 Secondary Identifier:  ? PAC:40606120
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis ARGSYNBSUB-PWY Setaria viridis pathologic  
Sviridis ARGSYN-PWY Setaria viridis pathologic  
Sviridis CITRULBIO-PWY Setaria viridis pathologic  
Sviridis GLUTAMINDEG-PWY Setaria viridis pathologic  
Sviridis PWY0-162 Setaria viridis pathologic  
Sviridis PWY-4984 Setaria viridis pathologic  
Sviridis PWY-5686 Setaria viridis pathologic  
Sviridis PWY-7211 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.1G296300 0.5kb upstream 0.5kb upstream 5293 true Chr_01: 35662904-35668196 Setaria viridis
Sevir.1G296300 0.5kb upstream 0.5kb upstream 500 false Chr_01: 35662904-35663403 Setaria viridis
Sevir.1G296300 0.5kb downstream 0.5kb downstream 5293 true Chr_01: 35663404-35668696 Setaria viridis
Sevir.1G296300 0.5kb downstream 0.5kb downstream 500 false Chr_01: 35668197-35668696 Setaria viridis
Sevir.1G296300 1.0kb upstream 1.0kb upstream 5793 true Chr_01: 35662404-35668196 Setaria viridis
Sevir.1G296300 1.0kb upstream 1.0kb upstream 1000 false Chr_01: 35662404-35663403 Setaria viridis
Sevir.1G296300 1.0kb downstream 1.0kb downstream 5793 true Chr_01: 35663404-35669196 Setaria viridis
Sevir.1G296300 1.0kb downstream 1.0kb downstream 1000 false Chr_01: 35668197-35669196 Setaria viridis
Sevir.1G296300 2.0kb upstream 2.0kb upstream 6793 true Chr_01: 35661404-35668196 Setaria viridis
Sevir.1G296300 2.0kb upstream 2.0kb upstream 2000 false Chr_01: 35661404-35663403 Setaria viridis
Sevir.1G296300 2.0kb downstream 2.0kb downstream 6793 true Chr_01: 35663404-35670196 Setaria viridis
Sevir.1G296300 2.0kb downstream 2.0kb downstream 2000 false Chr_01: 35668197-35670196 Setaria viridis
Sevir.1G296300 5.0kb upstream 5.0kb upstream 9793 true Chr_01: 35658404-35668196 Setaria viridis
Sevir.1G296300 5.0kb upstream 5.0kb upstream 5000 false Chr_01: 35658404-35663403 Setaria viridis
Sevir.1G296300 5.0kb downstream 5.0kb downstream 9793 true Chr_01: 35663404-35673196 Setaria viridis
Sevir.1G296300 5.0kb downstream 5.0kb downstream 5000 false Chr_01: 35668197-35673196 Setaria viridis
Sevir.1G296300 10.0kb upstream 10.0kb upstream 14793 true Chr_01: 35653404-35668196 Setaria viridis
Sevir.1G296300 10.0kb upstream 10.0kb upstream 10000 false Chr_01: 35653404-35663403 Setaria viridis
Sevir.1G296300 10.0kb downstream 10.0kb downstream 14793 true Chr_01: 35663404-35678196 Setaria viridis
Sevir.1G296300 10.0kb downstream 10.0kb downstream 10000 false Chr_01: 35668197-35678196 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191073 5267 Panicoideae View MSA
124573496 5269 Grass View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain