Gene : Sevir.9G214900 S. viridis v2.1
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  2384
Name:  ? Sevir.9G214900 Secondary Identifier:  ? PAC:40618161
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY1F-FLAVSYN Setaria viridis pathologic  
Sviridis PWY-6787 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.9G214900 0.5kb upstream 0.5kb upstream 2598 true Chr_09: 15590053-15592650 Setaria viridis
Sevir.9G214900 0.5kb upstream 0.5kb upstream 500 false Chr_09: 15592151-15592650 Setaria viridis
Sevir.9G214900 0.5kb downstream 0.5kb downstream 2598 true Chr_09: 15589553-15592150 Setaria viridis
Sevir.9G214900 0.5kb downstream 0.5kb downstream 500 false Chr_09: 15589553-15590052 Setaria viridis
Sevir.9G214900 1.0kb upstream 1.0kb upstream 3098 true Chr_09: 15590053-15593150 Setaria viridis
Sevir.9G214900 1.0kb upstream 1.0kb upstream 1000 false Chr_09: 15592151-15593150 Setaria viridis
Sevir.9G214900 1.0kb downstream 1.0kb downstream 3098 true Chr_09: 15589053-15592150 Setaria viridis
Sevir.9G214900 1.0kb downstream 1.0kb downstream 1000 false Chr_09: 15589053-15590052 Setaria viridis
Sevir.9G214900 2.0kb upstream 2.0kb upstream 4098 true Chr_09: 15590053-15594150 Setaria viridis
Sevir.9G214900 2.0kb upstream 2.0kb upstream 2000 false Chr_09: 15592151-15594150 Setaria viridis
Sevir.9G214900 2.0kb downstream 2.0kb downstream 4098 true Chr_09: 15588053-15592150 Setaria viridis
Sevir.9G214900 2.0kb downstream 2.0kb downstream 2000 false Chr_09: 15588053-15590052 Setaria viridis
Sevir.9G214900 5.0kb upstream 5.0kb upstream 7098 true Chr_09: 15590053-15597150 Setaria viridis
Sevir.9G214900 5.0kb upstream 5.0kb upstream 5000 false Chr_09: 15592151-15597150 Setaria viridis
Sevir.9G214900 5.0kb downstream 5.0kb downstream 7098 true Chr_09: 15585053-15592150 Setaria viridis
Sevir.9G214900 5.0kb downstream 5.0kb downstream 5000 false Chr_09: 15585053-15590052 Setaria viridis
Sevir.9G214900 10.0kb upstream 10.0kb upstream 12098 true Chr_09: 15590053-15602150 Setaria viridis
Sevir.9G214900 10.0kb upstream 10.0kb upstream 10000 false Chr_09: 15592151-15602150 Setaria viridis
Sevir.9G214900 10.0kb downstream 10.0kb downstream 12098 true Chr_09: 15580053-15592150 Setaria viridis
Sevir.9G214900 10.0kb downstream 10.0kb downstream 10000 false Chr_09: 15580053-15590052 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179338 5267 Panicoideae View MSA
124568709 5269 Grass View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain