Gene : Sevir.3G218600 S. viridis v2.1
Defline:  (1 of 2) PTHR11254//PTHR11254:SF345 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE // SUBFAMILY NOT NAMED Genomic Order:  2359
Name:  ? Sevir.3G218600 Secondary Identifier:  ? PAC:40648305
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY-7511 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.3G218600 0.5kb upstream 0.5kb upstream 10648 true Chr_03: 16329246-16339893 Setaria viridis
Sevir.3G218600 0.5kb upstream 0.5kb upstream 500 false Chr_03: 16329246-16329745 Setaria viridis
Sevir.3G218600 0.5kb downstream 0.5kb downstream 10648 true Chr_03: 16329746-16340393 Setaria viridis
Sevir.3G218600 0.5kb downstream 0.5kb downstream 500 false Chr_03: 16339894-16340393 Setaria viridis
Sevir.3G218600 1.0kb upstream 1.0kb upstream 11148 true Chr_03: 16328746-16339893 Setaria viridis
Sevir.3G218600 1.0kb upstream 1.0kb upstream 1000 false Chr_03: 16328746-16329745 Setaria viridis
Sevir.3G218600 1.0kb downstream 1.0kb downstream 11148 true Chr_03: 16329746-16340893 Setaria viridis
Sevir.3G218600 1.0kb downstream 1.0kb downstream 1000 false Chr_03: 16339894-16340893 Setaria viridis
Sevir.3G218600 2.0kb upstream 2.0kb upstream 12148 true Chr_03: 16327746-16339893 Setaria viridis
Sevir.3G218600 2.0kb upstream 2.0kb upstream 2000 false Chr_03: 16327746-16329745 Setaria viridis
Sevir.3G218600 2.0kb downstream 2.0kb downstream 12148 true Chr_03: 16329746-16341893 Setaria viridis
Sevir.3G218600 2.0kb downstream 2.0kb downstream 2000 false Chr_03: 16339894-16341893 Setaria viridis
Sevir.3G218600 5.0kb upstream 5.0kb upstream 15148 true Chr_03: 16324746-16339893 Setaria viridis
Sevir.3G218600 5.0kb upstream 5.0kb upstream 5000 false Chr_03: 16324746-16329745 Setaria viridis
Sevir.3G218600 5.0kb downstream 5.0kb downstream 15148 true Chr_03: 16329746-16344893 Setaria viridis
Sevir.3G218600 5.0kb downstream 5.0kb downstream 5000 false Chr_03: 16339894-16344893 Setaria viridis
Sevir.3G218600 10.0kb upstream 10.0kb upstream 20148 true Chr_03: 16319746-16339893 Setaria viridis
Sevir.3G218600 10.0kb upstream 10.0kb upstream 10000 false Chr_03: 16319746-16329745 Setaria viridis
Sevir.3G218600 10.0kb downstream 10.0kb downstream 20148 true Chr_03: 16329746-16349893 Setaria viridis
Sevir.3G218600 10.0kb downstream 10.0kb downstream 10000 false Chr_03: 16339894-16349893 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179694 5267 Panicoideae View MSA
124585478 5269 Grass View MSA
122044351 5273 Angiosperm View MSA
121310283 5274 Embryophyte View MSA
123428406 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain