Gene : Sevir.4G136600 S. viridis v2.1
Defline:  (1 of 1) PTHR11558//PTHR11558:SF29 - SPERMIDINE/SPERMINE SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  1918
Name:  ? Sevir.4G136600 Secondary Identifier:  ? PAC:40599574
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis BSUBPOLYAMSYN-PWY Setaria viridis pathologic  
Sviridis POLYAMINSYN3-PWY Setaria viridis pathologic  
Sviridis PWY-7528 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.4G136600 0.5kb upstream 0.5kb upstream 5735 true Chr_04: 25810074-25815808 Setaria viridis
Sevir.4G136600 0.5kb upstream 0.5kb upstream 500 false Chr_04: 25810074-25810573 Setaria viridis
Sevir.4G136600 0.5kb downstream 0.5kb downstream 5735 true Chr_04: 25810574-25816308 Setaria viridis
Sevir.4G136600 0.5kb downstream 0.5kb downstream 500 false Chr_04: 25815809-25816308 Setaria viridis
Sevir.4G136600 1.0kb upstream 1.0kb upstream 6235 true Chr_04: 25809574-25815808 Setaria viridis
Sevir.4G136600 1.0kb upstream 1.0kb upstream 1000 false Chr_04: 25809574-25810573 Setaria viridis
Sevir.4G136600 1.0kb downstream 1.0kb downstream 6235 true Chr_04: 25810574-25816808 Setaria viridis
Sevir.4G136600 1.0kb downstream 1.0kb downstream 1000 false Chr_04: 25815809-25816808 Setaria viridis
Sevir.4G136600 2.0kb upstream 2.0kb upstream 7235 true Chr_04: 25808574-25815808 Setaria viridis
Sevir.4G136600 2.0kb upstream 2.0kb upstream 2000 false Chr_04: 25808574-25810573 Setaria viridis
Sevir.4G136600 2.0kb downstream 2.0kb downstream 7235 true Chr_04: 25810574-25817808 Setaria viridis
Sevir.4G136600 2.0kb downstream 2.0kb downstream 2000 false Chr_04: 25815809-25817808 Setaria viridis
Sevir.4G136600 5.0kb upstream 5.0kb upstream 10235 true Chr_04: 25805574-25815808 Setaria viridis
Sevir.4G136600 5.0kb upstream 5.0kb upstream 5000 false Chr_04: 25805574-25810573 Setaria viridis
Sevir.4G136600 5.0kb downstream 5.0kb downstream 10235 true Chr_04: 25810574-25820808 Setaria viridis
Sevir.4G136600 5.0kb downstream 5.0kb downstream 5000 false Chr_04: 25815809-25820808 Setaria viridis
Sevir.4G136600 10.0kb upstream 10.0kb upstream 15235 true Chr_04: 25800574-25815808 Setaria viridis
Sevir.4G136600 10.0kb upstream 10.0kb upstream 10000 false Chr_04: 25800574-25810573 Setaria viridis
Sevir.4G136600 10.0kb downstream 10.0kb downstream 15235 true Chr_04: 25810574-25825808 Setaria viridis
Sevir.4G136600 10.0kb downstream 10.0kb downstream 10000 false Chr_04: 25815809-25825808 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187553 5267 Panicoideae View MSA
124577208 5269 Grass View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain