Gene : Sevir.3G171300 S. viridis v2.1
Defline:  (1 of 1) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED Genomic Order:  1857
Name:  ? Sevir.3G171300 Secondary Identifier:  ? PAC:40650861
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis GLYCOGENSYNTH-PWY Setaria viridis pathologic  
Sviridis PWY-622 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.3G171300 0.5kb upstream 0.5kb upstream 7201 true Chr_03: 11999444-12006644 Setaria viridis
Sevir.3G171300 0.5kb upstream 0.5kb upstream 500 false Chr_03: 12006145-12006644 Setaria viridis
Sevir.3G171300 0.5kb downstream 0.5kb downstream 7201 true Chr_03: 11998944-12006144 Setaria viridis
Sevir.3G171300 0.5kb downstream 0.5kb downstream 500 false Chr_03: 11998944-11999443 Setaria viridis
Sevir.3G171300 1.0kb upstream 1.0kb upstream 7701 true Chr_03: 11999444-12007144 Setaria viridis
Sevir.3G171300 1.0kb upstream 1.0kb upstream 1000 false Chr_03: 12006145-12007144 Setaria viridis
Sevir.3G171300 1.0kb downstream 1.0kb downstream 7701 true Chr_03: 11998444-12006144 Setaria viridis
Sevir.3G171300 1.0kb downstream 1.0kb downstream 1000 false Chr_03: 11998444-11999443 Setaria viridis
Sevir.3G171300 2.0kb upstream 2.0kb upstream 8701 true Chr_03: 11999444-12008144 Setaria viridis
Sevir.3G171300 2.0kb upstream 2.0kb upstream 2000 false Chr_03: 12006145-12008144 Setaria viridis
Sevir.3G171300 2.0kb downstream 2.0kb downstream 8701 true Chr_03: 11997444-12006144 Setaria viridis
Sevir.3G171300 2.0kb downstream 2.0kb downstream 2000 false Chr_03: 11997444-11999443 Setaria viridis
Sevir.3G171300 5.0kb upstream 5.0kb upstream 11701 true Chr_03: 11999444-12011144 Setaria viridis
Sevir.3G171300 5.0kb upstream 5.0kb upstream 5000 false Chr_03: 12006145-12011144 Setaria viridis
Sevir.3G171300 5.0kb downstream 5.0kb downstream 11701 true Chr_03: 11994444-12006144 Setaria viridis
Sevir.3G171300 5.0kb downstream 5.0kb downstream 5000 false Chr_03: 11994444-11999443 Setaria viridis
Sevir.3G171300 10.0kb upstream 10.0kb upstream 16701 true Chr_03: 11999444-12016144 Setaria viridis
Sevir.3G171300 10.0kb upstream 10.0kb upstream 10000 false Chr_03: 12006145-12016144 Setaria viridis
Sevir.3G171300 10.0kb downstream 10.0kb downstream 16701 true Chr_03: 11989444-12006144 Setaria viridis
Sevir.3G171300 10.0kb downstream 10.0kb downstream 10000 false Chr_03: 11989444-11999443 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189391 5267 Panicoideae View MSA
124578861 5269 Grass View MSA
122042885 5273 Angiosperm View MSA
121344527 5274 Embryophyte View MSA
123428648 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain