Gene : Sevir.4G002300 S. viridis v2.1
Defline:  (1 of 1) K00451 - homogentisate 1,2-dioxygenase (HGD, hmgA) Genomic Order:  27
Name:  ? Sevir.4G002300 Secondary Identifier:  ? PAC:40602288
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis TYRFUMCAT-PWY Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.4G002300 0.5kb upstream 0.5kb upstream 3983 true Chr_04: 273950-277932 Setaria viridis
Sevir.4G002300 0.5kb upstream 0.5kb upstream 500 false Chr_04: 277433-277932 Setaria viridis
Sevir.4G002300 0.5kb downstream 0.5kb downstream 3983 true Chr_04: 273450-277432 Setaria viridis
Sevir.4G002300 0.5kb downstream 0.5kb downstream 500 false Chr_04: 273450-273949 Setaria viridis
Sevir.4G002300 1.0kb upstream 1.0kb upstream 4483 true Chr_04: 273950-278432 Setaria viridis
Sevir.4G002300 1.0kb upstream 1.0kb upstream 1000 false Chr_04: 277433-278432 Setaria viridis
Sevir.4G002300 1.0kb downstream 1.0kb downstream 4483 true Chr_04: 272950-277432 Setaria viridis
Sevir.4G002300 1.0kb downstream 1.0kb downstream 1000 false Chr_04: 272950-273949 Setaria viridis
Sevir.4G002300 2.0kb upstream 2.0kb upstream 5483 true Chr_04: 273950-279432 Setaria viridis
Sevir.4G002300 2.0kb upstream 2.0kb upstream 2000 false Chr_04: 277433-279432 Setaria viridis
Sevir.4G002300 2.0kb downstream 2.0kb downstream 5483 true Chr_04: 271950-277432 Setaria viridis
Sevir.4G002300 2.0kb downstream 2.0kb downstream 2000 false Chr_04: 271950-273949 Setaria viridis
Sevir.4G002300 5.0kb upstream 5.0kb upstream 8483 true Chr_04: 273950-282432 Setaria viridis
Sevir.4G002300 5.0kb upstream 5.0kb upstream 5000 false Chr_04: 277433-282432 Setaria viridis
Sevir.4G002300 5.0kb downstream 5.0kb downstream 8483 true Chr_04: 268950-277432 Setaria viridis
Sevir.4G002300 5.0kb downstream 5.0kb downstream 5000 false Chr_04: 268950-273949 Setaria viridis
Sevir.4G002300 10.0kb upstream 10.0kb upstream 13483 true Chr_04: 273950-287432 Setaria viridis
Sevir.4G002300 10.0kb upstream 10.0kb upstream 10000 false Chr_04: 277433-287432 Setaria viridis
Sevir.4G002300 10.0kb downstream 10.0kb downstream 13483 true Chr_04: 263950-277432 Setaria viridis
Sevir.4G002300 10.0kb downstream 10.0kb downstream 10000 false Chr_04: 263950-273949 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178132 5267 Panicoideae View MSA
124584432 5269 Grass View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain