Gene : Sevir.8G127700 S. viridis v2.1

Defline:  (1 of 1) 4.2.1.109 - Methylthioribulose 1-phosphate dehydratase / 1-PMT-ribulose dehydratase Genomic Order:  1399
Name:  ? Sevir.8G127700 Secondary Identifier:  ? PAC:40639273

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY-4361 Setaria viridis pathologic  
Sviridis PWY-7270 Setaria viridis pathologic  
Sviridis PWY-7528 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.8G127700 0.5kb upstream 0.5kb upstream 8457 true Chr_08: 22469867-22478323 Setaria viridis
Sevir.8G127700 0.5kb upstream 0.5kb upstream 500 false Chr_08: 22477824-22478323 Setaria viridis
Sevir.8G127700 0.5kb downstream 0.5kb downstream 8457 true Chr_08: 22469367-22477823 Setaria viridis
Sevir.8G127700 0.5kb downstream 0.5kb downstream 500 false Chr_08: 22469367-22469866 Setaria viridis
Sevir.8G127700 1.0kb upstream 1.0kb upstream 8957 true Chr_08: 22469867-22478823 Setaria viridis
Sevir.8G127700 1.0kb upstream 1.0kb upstream 1000 false Chr_08: 22477824-22478823 Setaria viridis
Sevir.8G127700 1.0kb downstream 1.0kb downstream 8957 true Chr_08: 22468867-22477823 Setaria viridis
Sevir.8G127700 1.0kb downstream 1.0kb downstream 1000 false Chr_08: 22468867-22469866 Setaria viridis
Sevir.8G127700 2.0kb upstream 2.0kb upstream 9957 true Chr_08: 22469867-22479823 Setaria viridis
Sevir.8G127700 2.0kb upstream 2.0kb upstream 2000 false Chr_08: 22477824-22479823 Setaria viridis
Sevir.8G127700 2.0kb downstream 2.0kb downstream 9957 true Chr_08: 22467867-22477823 Setaria viridis
Sevir.8G127700 2.0kb downstream 2.0kb downstream 2000 false Chr_08: 22467867-22469866 Setaria viridis
Sevir.8G127700 5.0kb upstream 5.0kb upstream 12957 true Chr_08: 22469867-22482823 Setaria viridis
Sevir.8G127700 5.0kb upstream 5.0kb upstream 5000 false Chr_08: 22477824-22482823 Setaria viridis
Sevir.8G127700 5.0kb downstream 5.0kb downstream 12957 true Chr_08: 22464867-22477823 Setaria viridis
Sevir.8G127700 5.0kb downstream 5.0kb downstream 5000 false Chr_08: 22464867-22469866 Setaria viridis
Sevir.8G127700 10.0kb upstream 10.0kb upstream 17957 true Chr_08: 22469867-22487823 Setaria viridis
Sevir.8G127700 10.0kb upstream 10.0kb upstream 10000 false Chr_08: 22477824-22487823 Setaria viridis
Sevir.8G127700 10.0kb downstream 10.0kb downstream 17957 true Chr_08: 22459867-22477823 Setaria viridis
Sevir.8G127700 10.0kb downstream 10.0kb downstream 10000 false Chr_08: 22459867-22469866 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189754 5267 Panicoideae View MSA
124578733 5269 Grass View MSA
122042020 5273 Angiosperm View MSA
121345843 5274 Embryophyte View MSA
123425019 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain