Gene : Sevir.6G254300 S. viridis v2.1
Defline:  (1 of 1) PTHR23083//PTHR23083:SF397 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED Genomic Order:  2837
Name:  ? Sevir.6G254300 Secondary Identifier:  ? PAC:40621093
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sviridis PWY-7437 Setaria viridis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sevir.6G254300 0.5kb upstream 0.5kb upstream 7907 true Chr_06: 35902338-35910244 Setaria viridis
Sevir.6G254300 0.5kb upstream 0.5kb upstream 500 false Chr_06: 35902338-35902837 Setaria viridis
Sevir.6G254300 0.5kb downstream 0.5kb downstream 7907 true Chr_06: 35902838-35910744 Setaria viridis
Sevir.6G254300 0.5kb downstream 0.5kb downstream 500 false Chr_06: 35910245-35910744 Setaria viridis
Sevir.6G254300 1.0kb upstream 1.0kb upstream 8407 true Chr_06: 35901838-35910244 Setaria viridis
Sevir.6G254300 1.0kb upstream 1.0kb upstream 1000 false Chr_06: 35901838-35902837 Setaria viridis
Sevir.6G254300 1.0kb downstream 1.0kb downstream 8407 true Chr_06: 35902838-35911244 Setaria viridis
Sevir.6G254300 1.0kb downstream 1.0kb downstream 1000 false Chr_06: 35910245-35911244 Setaria viridis
Sevir.6G254300 2.0kb upstream 2.0kb upstream 9407 true Chr_06: 35900838-35910244 Setaria viridis
Sevir.6G254300 2.0kb upstream 2.0kb upstream 2000 false Chr_06: 35900838-35902837 Setaria viridis
Sevir.6G254300 2.0kb downstream 2.0kb downstream 9407 true Chr_06: 35902838-35912244 Setaria viridis
Sevir.6G254300 2.0kb downstream 2.0kb downstream 2000 false Chr_06: 35910245-35912244 Setaria viridis
Sevir.6G254300 5.0kb upstream 5.0kb upstream 12407 true Chr_06: 35897838-35910244 Setaria viridis
Sevir.6G254300 5.0kb upstream 5.0kb upstream 5000 false Chr_06: 35897838-35902837 Setaria viridis
Sevir.6G254300 5.0kb downstream 5.0kb downstream 12407 true Chr_06: 35902838-35915244 Setaria viridis
Sevir.6G254300 5.0kb downstream 5.0kb downstream 5000 false Chr_06: 35910245-35915244 Setaria viridis
Sevir.6G254300 10.0kb upstream 10.0kb upstream 17407 true Chr_06: 35892838-35910244 Setaria viridis
Sevir.6G254300 10.0kb upstream 10.0kb upstream 10000 false Chr_06: 35892838-35902837 Setaria viridis
Sevir.6G254300 10.0kb downstream 10.0kb downstream 17407 true Chr_06: 35902838-35920244 Setaria viridis
Sevir.6G254300 10.0kb downstream 10.0kb downstream 10000 false Chr_06: 35910245-35920244 Setaria viridis

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181207 5267 Panicoideae View MSA
124578816 5269 Grass View MSA
122044417 5273 Angiosperm View MSA
121347707 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain