Protein Domain : IPR000160

Type:  Domain Name:  GGDEF domain
Description:  The GGDEF domain, which has been named after the conserved central sequence pattern GG[DE][DE]F is widespread in prokaryotes. It is typically present inmultidomain proteins containing regulatory domains of signaling pathways or protein-protein or protein-ligand interaction modules, such as the responseregulatory domain, the PAS/PAC domain, the HAMP domain, the GAF domain, the FHA domain or the TPR repeat. However a few single-domain proteins are also known. The GGDEF domain is involved in signal transduction and is likely to catalyze synthesis or hydrolysis of cyclic diguanylate (c-diGMP, bis(3',5')-cyclic diguanylic acid), an effector molecule that consists of two cGMP moieties bound head-to-tail [, , ].Structural studies of PleD from Caulobacter crescentusshow that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase []. Short Name:  GGDEF_dom

0 Child Features

0 Contains

4 Cross Referencess

Identifier
PF00990
PS50887
SM00267
TIGR00254

4 Found Ins

DB identifier Type Name
IPR016839 Family Signal transduction diguanylate cyclase, CHASE2 sensor domain-containing, predicted
IPR014528 Family Predicted signal transduction phosphoesterase, YybT type
IPR013407 Family CRISPR-associated protein Crm2
IPR013408 Family CRISPR-associated protein Csm1

0 GO Annotation

0 Ontology Annotations

1 Parent Features

DB identifier Type Name
IPR029787 Domain Nucleotide cyclase

48 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
31433.m000016 B9TGJ8 PAC:16825022 Ricinus communis 371  
31451.m000036 B9TD64 PAC:16825030 Ricinus communis 394  
31573.m000014 B9TLW0 PAC:16825106 Ricinus communis 312  
35281.m000043 B9TF89 PAC:16826544 Ricinus communis 175  
35497.m000015 B9TG19 PAC:16826642 Ricinus communis 484  
35658.m000035 B9TCI0 PAC:16826694 Ricinus communis 237  
36021.m000018 B9TDG5 PAC:16826843 Ricinus communis 504  
40185.m000022 B9TNC1 PAC:16827294 Ricinus communis 122  
42640.m000013 B9TKY1 PAC:16827536 Ricinus communis 288  
43901.m000020 B9TNG7 PAC:16827640 Ricinus communis 204  
44054.m000021 B9TPV8 PAC:16827657 Ricinus communis 76  
45426.m000016 B9TPH2 PAC:16827804 Ricinus communis 125  
46860.m000017 B9TQQ7 PAC:16827933 Ricinus communis 113  
46975.m000023 B9TMD2 PAC:16827947 Ricinus communis 182  
46369.m000017 B9TQG7 PAC:16827876 Ricinus communis 141  
50844.m000013 B9TJH9 PAC:16828318 Ricinus communis 328  
50227.m000019 B9TMU7 PAC:16828242 Ricinus communis 166  
55141.m000013 B9TK28 PAC:16828784 Ricinus communis 248  
60276.m000023 B9TL50 PAC:16829340 Ricinus communis 213  
29221.m000048 B9T9G8 PAC:16802494 Ricinus communis 297  
28213.m000042 B9TAU8 PAC:16800346 Ricinus communis 426  
29096.m000058 B9T9D7 PAC:16802296 Ricinus communis 78  
29379.m000027 B9T9P4 PAC:16802771 Ricinus communis 402  
Pp3s42_290V3.2.p PAC:32945155 Physcomitrium patens 2151  
Pp3s42_290V3.1.p PAC:32945154 Physcomitrium patens 2151  
Pp3s32_260V3.1.p PAC:32948413 Physcomitrium patens 2208  
Brdisv1pangenome1008407m.p PAC:33623186 Brachypodium distachyon Pangenome 272  
Brdisv1pangenome1007782m.p PAC:33623053 Brachypodium distachyon Pangenome 722  
Brdisv1pangenome1009285m.p PAC:33656013 Brachypodium distachyon Pangenome 732  
Brdisv1pangenome1010485m.p PAC:33622738 Brachypodium distachyon Pangenome 326  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11119645
            11557134
            11682196
            15569936