Protein Domain : IPR008919

Type:  Domain Name:  Retrovirus capsid, N-terminal domain
Description:  The Gag polyprotein from retroviruses is processed by viral protease to produce the major structural proteins, including the capsid protein. The newly formed capsid protein rearranges to form the capsid core particle that surrounds the viral genome of the mature virus. The capsid is composed of two domains, the N-terminal domain (NTD), which contributes to viral core formation, and the C-terminal domain (CTD), which is required for capsid dimerisation, Gag oligomerization and viral formation. The NTD is composed of a five-helix bundle [, ]. Short Name:  Retrov_capsid_N

0 Child Features

0 Contains

2 Cross Referencess

Identifier
G3DSA:1.10.375.10
SSF47943

1 Found In

DB identifier Type Name
IPR000721 Family Retroviral nucleocapsid protein Gag

1 GO Annotation

GO Term Gene Name
GO:0016032 IPR008919

1 Ontology Annotations

GO Term Gene Name
GO:0016032 IPR008919

0 Parent Features

474 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
29827.m002626 B9S1P4 PAC:16810057 Ricinus communis 554  
51418.m000012 B9TCF2 PAC:16828394 Ricinus communis 230  
Cucsa.320920.1 A0A0A0L283 PAC:16977415 Cucumis sativus 237  
Cucsa.320920.2 A0A0A0L283 PAC:16977416 Cucumis sativus 237  
Cucsa.139380.1 PAC:16963362 Cucumis sativus 415  
AT2G38510.1 Q9ZVH5 PAC:19641535 Arabidopsis thaliana 486  
Lus10010456 PAC:23154092 Linum usitatissimum 645  
Potri.001G143700.1 A0A2K2BXG8 PAC:27043982 Populus trichocarpa 124  
Potri.003G191600.1 A0A2K2B9G3 PAC:26999053 Populus trichocarpa 673  
Potri.004G005500.5 A0A2K2AN30 PAC:26990204 Populus trichocarpa 396  
Potri.004G005500.2 A0A2K2AN37 PAC:26990199 Populus trichocarpa 545  
Potri.004G005500.3 PAC:26990202 Populus trichocarpa 478  
Potri.004G005500.4 PAC:26990201 Populus trichocarpa 540  
Potri.004G005500.1 A0A2K2AN37 PAC:26990200 Populus trichocarpa 545  
Potri.004G005500.6 PAC:26990203 Populus trichocarpa 468  
Gorai.003G171500.1 A0A0D2QM74 PAC:26798242 Gossypium raimondii 202  
Migut.A00944.1.p PAC:28939332 Mimulus guttatus 251  
Migut.A00944.2.p PAC:28939333 Mimulus guttatus 237  
Cagra.2692s0011.1.p PAC:28915840 Capsella grandiflora 486  
Glyma.05G094800.1.p A0A0R0JTA5 PAC:30525721 Glycine max 975  
Glyma.17G141800.2.p I1MV14 PAC:30479493 Glycine max 230  
Glyma.17G141800.1.p I1MV13 PAC:30479492 Glycine max 244  
Glyma.01G132200.1.p K7K3L3 PAC:30544819 Glycine max 538  
Brara.F01224.1.p A0A397YWP2 PAC:30628063 Brassica rapa FPsc 125  
Bostr.15774s0117.1.p PAC:30665817 Boechera stricta 725  
Bostr.23794s0217.1.p PAC:30650605 Boechera stricta 485  
Bostr.26326s0164.1.p PAC:30674908 Boechera stricta 116  
Bradi4g11116.1.p PAC:31144223 Brachypodium distachyon 335  
Medtr1g087060.1 G7IDQ4 PAC:31099999 Medicago truncatula 1738  
Medtr7g115190.1 A0A072UFI8 PAC:31079454 Medicago truncatula 1772  

2 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9931251
            10669613