Protein Domain : IPR015346

Type:  Domain Name:  DNA topoisomerase I, N-terminal, viral
Description:  DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (; topoisomerases II, IV and VI) break double-strand DNA [].Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents a domain foundpredominantly found in viral DNA topoisomerase I, a type IB enzyme. This domain assumes a beta(2)-alpha-beta-alpha-beta(2) fold, with a left-handed crossover between strands beta2 and beta3 []. Short Name:  TopoI_N_vir

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF09266
G3DSA:3.30.66.10

0 Found In

3 GO Annotations

GO Term Gene Name
GO:0003677 IPR015346
GO:0003916 IPR015346
GO:0006265 IPR015346

3 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR015346
GO:0003916 IPR015346
GO:0006265 IPR015346

0 Parent Features

63 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
29904.m002983 B9RWL6 PAC:16812628 Ricinus communis 143  
Gorai.009G226800.2 A0A0D2TU08 PAC:26768453 Gossypium raimondii 448  
Gorai.009G226800.1 A0A0D2QL78 PAC:26768452 Gossypium raimondii 462  
Gorai.011G294400.1 A0A0D2UZC4 PAC:26807658 Gossypium raimondii 241  
Gorai.011G293800.1 A0A0D2TFA8 PAC:26807014 Gossypium raimondii 354  
Migut.F02103.1.p PAC:28931551 Mimulus guttatus 78  
Cagra.2093s0015.1.p PAC:28899551 Capsella grandiflora 139  
Cagra.2093s0014.1.p PAC:28899548 Capsella grandiflora 139  
Medtr2g015720.1 G7IKB9 PAC:31063312 Medicago truncatula 360  
Prupe.6G157600.1.p M5WLM2 PAC:32087480 Prunus persica 118  
Kalax.0023s0064.1.p PAC:32591549 Kalanchoe laxiflora 359  
Kalax.0426s0020.1.p PAC:32555007 Kalanchoe laxiflora 359  
Bradi1g67115.1.p A0A2K2DTU7 PAC:32797676 Brachypodium distachyon 88  
Aqcoe1G008500.2.p PAC:33077645 Aquilegia coerulea 98  
Aqcoe1G008500.1.p PAC:33077644 Aquilegia coerulea 98  
Brdisv1Tek-21017178m.p PAC:33892256 Brachypodium distachyon Tek-2 222  
Brdisv1BdTR8i1018007m.p PAC:34222509 Brachypodium distachyon BdTR8i 222  
Brdisv1RON21036418m.p PAC:34775821 Brachypodium distachyon Ron2 69  
Kaladp0053s0358.1.p PAC:35742779 Kalanchoe fedtschenkoi 239  
Tp57577_TGAC_v2_mRNA6981 PAC:35990333 Trifolium pratense 233  
Podel.08G061000.1.p PAC:37305277 Populus deltoides WV94 219  
Podel.10G164400.1.p PAC:37338180 Populus deltoides WV94 229  
Bol018742 PAC:37371372 Brassica oleracea capitata 285  
Bol013522 PAC:37343972 Brassica oleracea capitata 191  
PGSC0003DMP400018079 PAC:37425683 Solanum tuberosum 99  
PGSC0003DMP400036697 PAC:37428430 Solanum tuberosum 147  
PGSC0003DMP400024540 PAC:37432077 Solanum tuberosum 617  
PGSC0003DMP400024541 PAC:37432078 Solanum tuberosum 617  
Oeu048961.1 PAC:37738795 Olea europaea 239  
evm.model.Scaffold_821.35 PAC:37838329 Coffea arabica 463  

5 Publications

First Author Title Year Journal Volume Pages PubMed ID
            7770916
            11395412
            12596227
            12042765
            7994576