Gene : Brara.D00545 B. rapa FPsc v1.3
Defline:  (1 of 10) PTHR11254 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  545
Name:  ? Brara.D00545 Secondary Identifier:  ? PAC:30621439
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D00545 0.5kb upstream 0.5kb upstream 5443 true A04: 4112568-4118010 Brassica rapa FPsc
Brara.D00545 0.5kb upstream 0.5kb upstream 500 false A04: 4117511-4118010 Brassica rapa FPsc
Brara.D00545 0.5kb downstream 0.5kb downstream 5443 true A04: 4112068-4117510 Brassica rapa FPsc
Brara.D00545 0.5kb downstream 0.5kb downstream 500 false A04: 4112068-4112567 Brassica rapa FPsc
Brara.D00545 1.0kb upstream 1.0kb upstream 5943 true A04: 4112568-4118510 Brassica rapa FPsc
Brara.D00545 1.0kb upstream 1.0kb upstream 1000 false A04: 4117511-4118510 Brassica rapa FPsc
Brara.D00545 1.0kb downstream 1.0kb downstream 5943 true A04: 4111568-4117510 Brassica rapa FPsc
Brara.D00545 1.0kb downstream 1.0kb downstream 1000 false A04: 4111568-4112567 Brassica rapa FPsc
Brara.D00545 2.0kb upstream 2.0kb upstream 6943 true A04: 4112568-4119510 Brassica rapa FPsc
Brara.D00545 2.0kb upstream 2.0kb upstream 2000 false A04: 4117511-4119510 Brassica rapa FPsc
Brara.D00545 2.0kb downstream 2.0kb downstream 6943 true A04: 4110568-4117510 Brassica rapa FPsc
Brara.D00545 2.0kb downstream 2.0kb downstream 2000 false A04: 4110568-4112567 Brassica rapa FPsc
Brara.D00545 5.0kb upstream 5.0kb upstream 9943 true A04: 4112568-4122510 Brassica rapa FPsc
Brara.D00545 5.0kb upstream 5.0kb upstream 5000 false A04: 4117511-4122510 Brassica rapa FPsc
Brara.D00545 5.0kb downstream 5.0kb downstream 9943 true A04: 4107568-4117510 Brassica rapa FPsc
Brara.D00545 5.0kb downstream 5.0kb downstream 5000 false A04: 4107568-4112567 Brassica rapa FPsc
Brara.D00545 10.0kb upstream 10.0kb upstream 14943 true A04: 4112568-4127510 Brassica rapa FPsc
Brara.D00545 10.0kb upstream 10.0kb upstream 10000 false A04: 4117511-4127510 Brassica rapa FPsc
Brara.D00545 10.0kb downstream 10.0kb downstream 14943 true A04: 4102568-4117510 Brassica rapa FPsc
Brara.D00545 10.0kb downstream 10.0kb downstream 10000 false A04: 4102568-4112567 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367039 5261 Brassicaceae View MSA
123827587 5264 Brassicales-Malvales View MSA
124346572 5266 SBM View MSA
124252639 5268 Malvidae View MSA
124065760 5270 Rosid View MSA
123737097 5271 Pentapetalae View MSA
122793139 5272 Eudicot View MSA
122047566 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121351552 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier