Gene : Brara.D00562 B. rapa FPsc v1.3
Defline:  (1 of 13) 4.1.2.13 - Fructose-bisphosphate aldolase / Fructose-1,6-bisphosphate triosephosphate-lyase Genomic Order:  562
Name:  ? Brara.D00562 Secondary Identifier:  ? PAC:30620316
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Sequence Feature Displayer

Ontology Annotation Displayer

10 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ANAEROFRUCAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ANAGLYCOLYSIS-PWY Brassica rapa FPsc pathologic  
BrapaFPsc CALVIN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PHOTOALL-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-1042 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-373 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc SUCSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D00562 0.5kb upstream 0.5kb upstream 2347 true A04: 4251060-4253406 Brassica rapa FPsc
Brara.D00562 0.5kb upstream 0.5kb upstream 500 false A04: 4251060-4251559 Brassica rapa FPsc
Brara.D00562 0.5kb downstream 0.5kb downstream 2347 true A04: 4251560-4253906 Brassica rapa FPsc
Brara.D00562 0.5kb downstream 0.5kb downstream 500 false A04: 4253407-4253906 Brassica rapa FPsc
Brara.D00562 1.0kb upstream 1.0kb upstream 2847 true A04: 4250560-4253406 Brassica rapa FPsc
Brara.D00562 1.0kb upstream 1.0kb upstream 1000 false A04: 4250560-4251559 Brassica rapa FPsc
Brara.D00562 1.0kb downstream 1.0kb downstream 2847 true A04: 4251560-4254406 Brassica rapa FPsc
Brara.D00562 1.0kb downstream 1.0kb downstream 1000 false A04: 4253407-4254406 Brassica rapa FPsc
Brara.D00562 2.0kb upstream 2.0kb upstream 3847 true A04: 4249560-4253406 Brassica rapa FPsc
Brara.D00562 2.0kb upstream 2.0kb upstream 2000 false A04: 4249560-4251559 Brassica rapa FPsc
Brara.D00562 2.0kb downstream 2.0kb downstream 3847 true A04: 4251560-4255406 Brassica rapa FPsc
Brara.D00562 2.0kb downstream 2.0kb downstream 2000 false A04: 4253407-4255406 Brassica rapa FPsc
Brara.D00562 5.0kb upstream 5.0kb upstream 6847 true A04: 4246560-4253406 Brassica rapa FPsc
Brara.D00562 5.0kb upstream 5.0kb upstream 5000 false A04: 4246560-4251559 Brassica rapa FPsc
Brara.D00562 5.0kb downstream 5.0kb downstream 6847 true A04: 4251560-4258406 Brassica rapa FPsc
Brara.D00562 5.0kb downstream 5.0kb downstream 5000 false A04: 4253407-4258406 Brassica rapa FPsc
Brara.D00562 10.0kb upstream 10.0kb upstream 11847 true A04: 4241560-4253406 Brassica rapa FPsc
Brara.D00562 10.0kb upstream 10.0kb upstream 10000 false A04: 4241560-4251559 Brassica rapa FPsc
Brara.D00562 10.0kb downstream 10.0kb downstream 11847 true A04: 4251560-4263406 Brassica rapa FPsc
Brara.D00562 10.0kb downstream 10.0kb downstream 10000 false A04: 4253407-4263406 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378662 5261 Brassicaceae View MSA
123836011 5264 Brassicales-Malvales View MSA
124341755 5266 SBM View MSA
124249698 5268 Malvidae View MSA
124060719 5270 Rosid View MSA
123751552 5271 Pentapetalae View MSA
122795732 5272 Eudicot View MSA
122046933 5273 Angiosperm View MSA
121346548 5274 Embryophyte View MSA
123428415 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier