Gene : Brara.F01616 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  1616
Name:  ? Brara.F01616 Secondary Identifier:  ? PAC:30631420
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F01616 0.5kb upstream 0.5kb upstream 4315 true A06: 9708988-9713302 Brassica rapa FPsc
Brara.F01616 0.5kb upstream 0.5kb upstream 500 false A06: 9712803-9713302 Brassica rapa FPsc
Brara.F01616 0.5kb downstream 0.5kb downstream 4315 true A06: 9708488-9712802 Brassica rapa FPsc
Brara.F01616 0.5kb downstream 0.5kb downstream 500 false A06: 9708488-9708987 Brassica rapa FPsc
Brara.F01616 1.0kb upstream 1.0kb upstream 4815 true A06: 9708988-9713802 Brassica rapa FPsc
Brara.F01616 1.0kb upstream 1.0kb upstream 1000 false A06: 9712803-9713802 Brassica rapa FPsc
Brara.F01616 1.0kb downstream 1.0kb downstream 4815 true A06: 9707988-9712802 Brassica rapa FPsc
Brara.F01616 1.0kb downstream 1.0kb downstream 1000 false A06: 9707988-9708987 Brassica rapa FPsc
Brara.F01616 2.0kb upstream 2.0kb upstream 5815 true A06: 9708988-9714802 Brassica rapa FPsc
Brara.F01616 2.0kb upstream 2.0kb upstream 2000 false A06: 9712803-9714802 Brassica rapa FPsc
Brara.F01616 2.0kb downstream 2.0kb downstream 5815 true A06: 9706988-9712802 Brassica rapa FPsc
Brara.F01616 2.0kb downstream 2.0kb downstream 2000 false A06: 9706988-9708987 Brassica rapa FPsc
Brara.F01616 5.0kb upstream 5.0kb upstream 8815 true A06: 9708988-9717802 Brassica rapa FPsc
Brara.F01616 5.0kb upstream 5.0kb upstream 5000 false A06: 9712803-9717802 Brassica rapa FPsc
Brara.F01616 5.0kb downstream 5.0kb downstream 8815 true A06: 9703988-9712802 Brassica rapa FPsc
Brara.F01616 5.0kb downstream 5.0kb downstream 5000 false A06: 9703988-9708987 Brassica rapa FPsc
Brara.F01616 10.0kb upstream 10.0kb upstream 13815 true A06: 9708988-9722802 Brassica rapa FPsc
Brara.F01616 10.0kb upstream 10.0kb upstream 10000 false A06: 9712803-9722802 Brassica rapa FPsc
Brara.F01616 10.0kb downstream 10.0kb downstream 13815 true A06: 9698988-9712802 Brassica rapa FPsc
Brara.F01616 10.0kb downstream 10.0kb downstream 10000 false A06: 9698988-9708987 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381406 5261 Brassicaceae View MSA
123838000 5264 Brassicales-Malvales View MSA
124337628 5266 SBM View MSA
124239188 5268 Malvidae View MSA
124065220 5270 Rosid View MSA
123746199 5271 Pentapetalae View MSA
122794152 5272 Eudicot View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier