Gene : Brara.F01502 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR13871:SF43 - CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN Genomic Order:  1502
Name:  ? Brara.F01502 Secondary Identifier:  ? PAC:30629267
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7039 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F01502 0.5kb upstream 0.5kb upstream 2368 true A06: 8793316-8795683 Brassica rapa FPsc
Brara.F01502 0.5kb upstream 0.5kb upstream 500 false A06: 8795184-8795683 Brassica rapa FPsc
Brara.F01502 0.5kb downstream 0.5kb downstream 2368 true A06: 8792816-8795183 Brassica rapa FPsc
Brara.F01502 0.5kb downstream 0.5kb downstream 500 false A06: 8792816-8793315 Brassica rapa FPsc
Brara.F01502 1.0kb upstream 1.0kb upstream 2868 true A06: 8793316-8796183 Brassica rapa FPsc
Brara.F01502 1.0kb upstream 1.0kb upstream 1000 false A06: 8795184-8796183 Brassica rapa FPsc
Brara.F01502 1.0kb downstream 1.0kb downstream 2868 true A06: 8792316-8795183 Brassica rapa FPsc
Brara.F01502 1.0kb downstream 1.0kb downstream 1000 false A06: 8792316-8793315 Brassica rapa FPsc
Brara.F01502 2.0kb upstream 2.0kb upstream 3868 true A06: 8793316-8797183 Brassica rapa FPsc
Brara.F01502 2.0kb upstream 2.0kb upstream 2000 false A06: 8795184-8797183 Brassica rapa FPsc
Brara.F01502 2.0kb downstream 2.0kb downstream 3868 true A06: 8791316-8795183 Brassica rapa FPsc
Brara.F01502 2.0kb downstream 2.0kb downstream 2000 false A06: 8791316-8793315 Brassica rapa FPsc
Brara.F01502 5.0kb upstream 5.0kb upstream 6868 true A06: 8793316-8800183 Brassica rapa FPsc
Brara.F01502 5.0kb upstream 5.0kb upstream 5000 false A06: 8795184-8800183 Brassica rapa FPsc
Brara.F01502 5.0kb downstream 5.0kb downstream 6868 true A06: 8788316-8795183 Brassica rapa FPsc
Brara.F01502 5.0kb downstream 5.0kb downstream 5000 false A06: 8788316-8793315 Brassica rapa FPsc
Brara.F01502 10.0kb upstream 10.0kb upstream 11868 true A06: 8793316-8805183 Brassica rapa FPsc
Brara.F01502 10.0kb upstream 10.0kb upstream 10000 false A06: 8795184-8805183 Brassica rapa FPsc
Brara.F01502 10.0kb downstream 10.0kb downstream 11868 true A06: 8783316-8795183 Brassica rapa FPsc
Brara.F01502 10.0kb downstream 10.0kb downstream 10000 false A06: 8783316-8793315 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368030 5261 Brassicaceae View MSA
123840186 5264 Brassicales-Malvales View MSA
124340169 5266 SBM View MSA
124239800 5268 Malvidae View MSA
124061388 5270 Rosid View MSA
123737887 5271 Pentapetalae View MSA
122796546 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier