Gene : Brara.D00402 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11946:SF89 - METHIONYL-TRNA SYNTHETASE Genomic Order:  402
Name:  ? Brara.D00402 Secondary Identifier:  ? PAC:30620596
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D00402 0.5kb upstream 0.5kb upstream 3396 true A04: 2878221-2881616 Brassica rapa FPsc
Brara.D00402 0.5kb upstream 0.5kb upstream 500 false A04: 2878221-2878720 Brassica rapa FPsc
Brara.D00402 0.5kb downstream 0.5kb downstream 3396 true A04: 2878721-2882116 Brassica rapa FPsc
Brara.D00402 0.5kb downstream 0.5kb downstream 500 false A04: 2881617-2882116 Brassica rapa FPsc
Brara.D00402 1.0kb upstream 1.0kb upstream 3896 true A04: 2877721-2881616 Brassica rapa FPsc
Brara.D00402 1.0kb upstream 1.0kb upstream 1000 false A04: 2877721-2878720 Brassica rapa FPsc
Brara.D00402 1.0kb downstream 1.0kb downstream 3896 true A04: 2878721-2882616 Brassica rapa FPsc
Brara.D00402 1.0kb downstream 1.0kb downstream 1000 false A04: 2881617-2882616 Brassica rapa FPsc
Brara.D00402 2.0kb upstream 2.0kb upstream 4896 true A04: 2876721-2881616 Brassica rapa FPsc
Brara.D00402 2.0kb upstream 2.0kb upstream 2000 false A04: 2876721-2878720 Brassica rapa FPsc
Brara.D00402 2.0kb downstream 2.0kb downstream 4896 true A04: 2878721-2883616 Brassica rapa FPsc
Brara.D00402 2.0kb downstream 2.0kb downstream 2000 false A04: 2881617-2883616 Brassica rapa FPsc
Brara.D00402 5.0kb upstream 5.0kb upstream 7896 true A04: 2873721-2881616 Brassica rapa FPsc
Brara.D00402 5.0kb upstream 5.0kb upstream 5000 false A04: 2873721-2878720 Brassica rapa FPsc
Brara.D00402 5.0kb downstream 5.0kb downstream 7896 true A04: 2878721-2886616 Brassica rapa FPsc
Brara.D00402 5.0kb downstream 5.0kb downstream 5000 false A04: 2881617-2886616 Brassica rapa FPsc
Brara.D00402 10.0kb upstream 10.0kb upstream 12896 true A04: 2868721-2881616 Brassica rapa FPsc
Brara.D00402 10.0kb upstream 10.0kb upstream 10000 false A04: 2868721-2878720 Brassica rapa FPsc
Brara.D00402 10.0kb downstream 10.0kb downstream 12896 true A04: 2878721-2891616 Brassica rapa FPsc
Brara.D00402 10.0kb downstream 10.0kb downstream 10000 false A04: 2881617-2891616 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362064 5261 Brassicaceae View MSA
123831392 5264 Brassicales-Malvales View MSA
124342754 5266 SBM View MSA
124242853 5268 Malvidae View MSA
124065458 5270 Rosid View MSA
123752968 5271 Pentapetalae View MSA
122787831 5272 Eudicot View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier