Gene : Brara.F01129 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE Genomic Order:  1129
Name:  ? Brara.F01129 Secondary Identifier:  ? PAC:30630979
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ANAEROFRUCAT-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ANAGLYCOLYSIS-PWY Brassica rapa FPsc pathologic  
BrapaFPsc GLUCONEO-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-1042 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY66-399 Brassica rapa FPsc pathologic  
BrapaFPsc SUCSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F01129 0.5kb upstream 0.5kb upstream 3840 true A06: 6310019-6313858 Brassica rapa FPsc
Brara.F01129 0.5kb upstream 0.5kb upstream 500 false A06: 6310019-6310518 Brassica rapa FPsc
Brara.F01129 0.5kb downstream 0.5kb downstream 3840 true A06: 6310519-6314358 Brassica rapa FPsc
Brara.F01129 0.5kb downstream 0.5kb downstream 500 false A06: 6313859-6314358 Brassica rapa FPsc
Brara.F01129 1.0kb upstream 1.0kb upstream 4340 true A06: 6309519-6313858 Brassica rapa FPsc
Brara.F01129 1.0kb upstream 1.0kb upstream 1000 false A06: 6309519-6310518 Brassica rapa FPsc
Brara.F01129 1.0kb downstream 1.0kb downstream 4340 true A06: 6310519-6314858 Brassica rapa FPsc
Brara.F01129 1.0kb downstream 1.0kb downstream 1000 false A06: 6313859-6314858 Brassica rapa FPsc
Brara.F01129 2.0kb upstream 2.0kb upstream 5340 true A06: 6308519-6313858 Brassica rapa FPsc
Brara.F01129 2.0kb upstream 2.0kb upstream 2000 false A06: 6308519-6310518 Brassica rapa FPsc
Brara.F01129 2.0kb downstream 2.0kb downstream 5340 true A06: 6310519-6315858 Brassica rapa FPsc
Brara.F01129 2.0kb downstream 2.0kb downstream 2000 false A06: 6313859-6315858 Brassica rapa FPsc
Brara.F01129 5.0kb upstream 5.0kb upstream 8340 true A06: 6305519-6313858 Brassica rapa FPsc
Brara.F01129 5.0kb upstream 5.0kb upstream 5000 false A06: 6305519-6310518 Brassica rapa FPsc
Brara.F01129 5.0kb downstream 5.0kb downstream 8340 true A06: 6310519-6318858 Brassica rapa FPsc
Brara.F01129 5.0kb downstream 5.0kb downstream 5000 false A06: 6313859-6318858 Brassica rapa FPsc
Brara.F01129 10.0kb upstream 10.0kb upstream 13340 true A06: 6300519-6313858 Brassica rapa FPsc
Brara.F01129 10.0kb upstream 10.0kb upstream 10000 false A06: 6300519-6310518 Brassica rapa FPsc
Brara.F01129 10.0kb downstream 10.0kb downstream 13340 true A06: 6310519-6323858 Brassica rapa FPsc
Brara.F01129 10.0kb downstream 10.0kb downstream 10000 false A06: 6313859-6323858 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374998 5261 Brassicaceae View MSA
123836882 5264 Brassicales-Malvales View MSA
124346127 5266 SBM View MSA
124243370 5268 Malvidae View MSA
124063810 5270 Rosid View MSA
123738168 5271 Pentapetalae View MSA
122792653 5272 Eudicot View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier