Gene : Brara.F02647 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR12526:SF17 - STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC Genomic Order:  2647
Name:  ? Brara.F02647 Secondary Identifier:  ? PAC:30630426
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYCOGENSYNTH-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-622 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F02647 0.5kb upstream 0.5kb upstream 4626 true A06: 21883449-21888074 Brassica rapa FPsc
Brara.F02647 0.5kb upstream 0.5kb upstream 500 false A06: 21883449-21883948 Brassica rapa FPsc
Brara.F02647 0.5kb downstream 0.5kb downstream 4626 true A06: 21883949-21888574 Brassica rapa FPsc
Brara.F02647 0.5kb downstream 0.5kb downstream 500 false A06: 21888075-21888574 Brassica rapa FPsc
Brara.F02647 1.0kb upstream 1.0kb upstream 5126 true A06: 21882949-21888074 Brassica rapa FPsc
Brara.F02647 1.0kb upstream 1.0kb upstream 1000 false A06: 21882949-21883948 Brassica rapa FPsc
Brara.F02647 1.0kb downstream 1.0kb downstream 5126 true A06: 21883949-21889074 Brassica rapa FPsc
Brara.F02647 1.0kb downstream 1.0kb downstream 1000 false A06: 21888075-21889074 Brassica rapa FPsc
Brara.F02647 2.0kb upstream 2.0kb upstream 6126 true A06: 21881949-21888074 Brassica rapa FPsc
Brara.F02647 2.0kb upstream 2.0kb upstream 2000 false A06: 21881949-21883948 Brassica rapa FPsc
Brara.F02647 2.0kb downstream 2.0kb downstream 6126 true A06: 21883949-21890074 Brassica rapa FPsc
Brara.F02647 2.0kb downstream 2.0kb downstream 2000 false A06: 21888075-21890074 Brassica rapa FPsc
Brara.F02647 5.0kb upstream 5.0kb upstream 9126 true A06: 21878949-21888074 Brassica rapa FPsc
Brara.F02647 5.0kb upstream 5.0kb upstream 5000 false A06: 21878949-21883948 Brassica rapa FPsc
Brara.F02647 5.0kb downstream 5.0kb downstream 9126 true A06: 21883949-21893074 Brassica rapa FPsc
Brara.F02647 5.0kb downstream 5.0kb downstream 5000 false A06: 21888075-21893074 Brassica rapa FPsc
Brara.F02647 10.0kb upstream 10.0kb upstream 14126 true A06: 21873949-21888074 Brassica rapa FPsc
Brara.F02647 10.0kb upstream 10.0kb upstream 10000 false A06: 21873949-21883948 Brassica rapa FPsc
Brara.F02647 10.0kb downstream 10.0kb downstream 14126 true A06: 21883949-21898074 Brassica rapa FPsc
Brara.F02647 10.0kb downstream 10.0kb downstream 10000 false A06: 21888075-21898074 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371005 5261 Brassicaceae View MSA
123838245 5264 Brassicales-Malvales View MSA
124341785 5266 SBM View MSA
124239444 5268 Malvidae View MSA
124060940 5270 Rosid View MSA
123737274 5271 Pentapetalae View MSA
122791286 5272 Eudicot View MSA
122042634 5273 Angiosperm View MSA
121343835 5274 Embryophyte View MSA
123426751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier