Gene : Brara.F02072 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  2072
Name:  ? Brara.F02072 Secondary Identifier:  ? PAC:30628272
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F02072 0.5kb upstream 0.5kb upstream 4220 true A06: 17303684-17307903 Brassica rapa FPsc
Brara.F02072 0.5kb upstream 0.5kb upstream 500 false A06: 17307404-17307903 Brassica rapa FPsc
Brara.F02072 0.5kb downstream 0.5kb downstream 4220 true A06: 17303184-17307403 Brassica rapa FPsc
Brara.F02072 0.5kb downstream 0.5kb downstream 500 false A06: 17303184-17303683 Brassica rapa FPsc
Brara.F02072 1.0kb upstream 1.0kb upstream 4720 true A06: 17303684-17308403 Brassica rapa FPsc
Brara.F02072 1.0kb upstream 1.0kb upstream 1000 false A06: 17307404-17308403 Brassica rapa FPsc
Brara.F02072 1.0kb downstream 1.0kb downstream 4720 true A06: 17302684-17307403 Brassica rapa FPsc
Brara.F02072 1.0kb downstream 1.0kb downstream 1000 false A06: 17302684-17303683 Brassica rapa FPsc
Brara.F02072 2.0kb upstream 2.0kb upstream 5720 true A06: 17303684-17309403 Brassica rapa FPsc
Brara.F02072 2.0kb upstream 2.0kb upstream 2000 false A06: 17307404-17309403 Brassica rapa FPsc
Brara.F02072 2.0kb downstream 2.0kb downstream 5720 true A06: 17301684-17307403 Brassica rapa FPsc
Brara.F02072 2.0kb downstream 2.0kb downstream 2000 false A06: 17301684-17303683 Brassica rapa FPsc
Brara.F02072 5.0kb upstream 5.0kb upstream 8720 true A06: 17303684-17312403 Brassica rapa FPsc
Brara.F02072 5.0kb upstream 5.0kb upstream 5000 false A06: 17307404-17312403 Brassica rapa FPsc
Brara.F02072 5.0kb downstream 5.0kb downstream 8720 true A06: 17298684-17307403 Brassica rapa FPsc
Brara.F02072 5.0kb downstream 5.0kb downstream 5000 false A06: 17298684-17303683 Brassica rapa FPsc
Brara.F02072 10.0kb upstream 10.0kb upstream 13720 true A06: 17303684-17317403 Brassica rapa FPsc
Brara.F02072 10.0kb upstream 10.0kb upstream 10000 false A06: 17307404-17317403 Brassica rapa FPsc
Brara.F02072 10.0kb downstream 10.0kb downstream 13720 true A06: 17293684-17307403 Brassica rapa FPsc
Brara.F02072 10.0kb downstream 10.0kb downstream 10000 false A06: 17293684-17303683 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122350244 5261 Brassicaceae Singleton cluster - no MSA
123789307 5264 Brassicales-Malvales Singleton cluster - no MSA
124287310 5266 SBM Singleton cluster - no MSA
124141010 5268 Malvidae Singleton cluster - no MSA
123868137 5270 Rosid Singleton cluster - no MSA
123452890 5271 Pentapetalae Singleton cluster - no MSA
122488369 5272 Eudicot Singleton cluster - no MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier