Gene : Brara.D01085 B. rapa FPsc v1.3
Defline:  (1 of 20) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  1085
Name:  ? Brara.D01085 Secondary Identifier:  ? PAC:30620213
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D01085 0.5kb upstream 0.5kb upstream 1097 true A04: 10080059-10081155 Brassica rapa FPsc
Brara.D01085 0.5kb upstream 0.5kb upstream 500 false A04: 10080656-10081155 Brassica rapa FPsc
Brara.D01085 0.5kb downstream 0.5kb downstream 1097 true A04: 10079559-10080655 Brassica rapa FPsc
Brara.D01085 0.5kb downstream 0.5kb downstream 500 false A04: 10079559-10080058 Brassica rapa FPsc
Brara.D01085 1.0kb upstream 1.0kb upstream 1597 true A04: 10080059-10081655 Brassica rapa FPsc
Brara.D01085 1.0kb upstream 1.0kb upstream 1000 false A04: 10080656-10081655 Brassica rapa FPsc
Brara.D01085 1.0kb downstream 1.0kb downstream 1597 true A04: 10079059-10080655 Brassica rapa FPsc
Brara.D01085 1.0kb downstream 1.0kb downstream 1000 false A04: 10079059-10080058 Brassica rapa FPsc
Brara.D01085 2.0kb upstream 2.0kb upstream 2597 true A04: 10080059-10082655 Brassica rapa FPsc
Brara.D01085 2.0kb upstream 2.0kb upstream 2000 false A04: 10080656-10082655 Brassica rapa FPsc
Brara.D01085 2.0kb downstream 2.0kb downstream 2597 true A04: 10078059-10080655 Brassica rapa FPsc
Brara.D01085 2.0kb downstream 2.0kb downstream 2000 false A04: 10078059-10080058 Brassica rapa FPsc
Brara.D01085 5.0kb upstream 5.0kb upstream 5597 true A04: 10080059-10085655 Brassica rapa FPsc
Brara.D01085 5.0kb upstream 5.0kb upstream 5000 false A04: 10080656-10085655 Brassica rapa FPsc
Brara.D01085 5.0kb downstream 5.0kb downstream 5597 true A04: 10075059-10080655 Brassica rapa FPsc
Brara.D01085 5.0kb downstream 5.0kb downstream 5000 false A04: 10075059-10080058 Brassica rapa FPsc
Brara.D01085 10.0kb upstream 10.0kb upstream 10597 true A04: 10080059-10090655 Brassica rapa FPsc
Brara.D01085 10.0kb upstream 10.0kb upstream 10000 false A04: 10080656-10090655 Brassica rapa FPsc
Brara.D01085 10.0kb downstream 10.0kb downstream 10597 true A04: 10070059-10080655 Brassica rapa FPsc
Brara.D01085 10.0kb downstream 10.0kb downstream 10000 false A04: 10070059-10080058 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376328 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier