Gene : Brara.F03321 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  3321
Name:  ? Brara.F03321 Secondary Identifier:  ? PAC:30631878
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-735 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F03321 0.5kb upstream 0.5kb upstream 2637 true A06: 25938181-25940817 Brassica rapa FPsc
Brara.F03321 0.5kb upstream 0.5kb upstream 500 false A06: 25940318-25940817 Brassica rapa FPsc
Brara.F03321 0.5kb downstream 0.5kb downstream 2637 true A06: 25937681-25940317 Brassica rapa FPsc
Brara.F03321 0.5kb downstream 0.5kb downstream 500 false A06: 25937681-25938180 Brassica rapa FPsc
Brara.F03321 1.0kb upstream 1.0kb upstream 3137 true A06: 25938181-25941317 Brassica rapa FPsc
Brara.F03321 1.0kb upstream 1.0kb upstream 1000 false A06: 25940318-25941317 Brassica rapa FPsc
Brara.F03321 1.0kb downstream 1.0kb downstream 3137 true A06: 25937181-25940317 Brassica rapa FPsc
Brara.F03321 1.0kb downstream 1.0kb downstream 1000 false A06: 25937181-25938180 Brassica rapa FPsc
Brara.F03321 2.0kb upstream 2.0kb upstream 4137 true A06: 25938181-25942317 Brassica rapa FPsc
Brara.F03321 2.0kb upstream 2.0kb upstream 2000 false A06: 25940318-25942317 Brassica rapa FPsc
Brara.F03321 2.0kb downstream 2.0kb downstream 4137 true A06: 25936181-25940317 Brassica rapa FPsc
Brara.F03321 2.0kb downstream 2.0kb downstream 2000 false A06: 25936181-25938180 Brassica rapa FPsc
Brara.F03321 5.0kb upstream 5.0kb upstream 7137 true A06: 25938181-25945317 Brassica rapa FPsc
Brara.F03321 5.0kb upstream 5.0kb upstream 5000 false A06: 25940318-25945317 Brassica rapa FPsc
Brara.F03321 5.0kb downstream 5.0kb downstream 7137 true A06: 25933181-25940317 Brassica rapa FPsc
Brara.F03321 5.0kb downstream 5.0kb downstream 5000 false A06: 25933181-25938180 Brassica rapa FPsc
Brara.F03321 10.0kb upstream 10.0kb upstream 12137 true A06: 25938181-25950317 Brassica rapa FPsc
Brara.F03321 10.0kb upstream 10.0kb upstream 10000 false A06: 25940318-25950317 Brassica rapa FPsc
Brara.F03321 10.0kb downstream 10.0kb downstream 12137 true A06: 25928181-25940317 Brassica rapa FPsc
Brara.F03321 10.0kb downstream 10.0kb downstream 10000 false A06: 25928181-25938180 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122351034 5261 Brassicaceae Singleton cluster - no MSA
123789973 5264 Brassicales-Malvales Singleton cluster - no MSA
124287949 5266 SBM Singleton cluster - no MSA
124256246 5268 Malvidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier