Gene : Brara.A01777 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11387:SF17 - CYTOCHROME C OXIDASE SUBUNIT 6B-LIKE-RELATED Genomic Order:  1777
Name:  ? Brara.A01777 Secondary Identifier:  ? PAC:30637834
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-3781 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7279 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A01777 0.5kb upstream 0.5kb upstream 1660 true A01: 10058814-10060473 Brassica rapa FPsc
Brara.A01777 0.5kb upstream 0.5kb upstream 500 false A01: 10059974-10060473 Brassica rapa FPsc
Brara.A01777 0.5kb downstream 0.5kb downstream 1660 true A01: 10058314-10059973 Brassica rapa FPsc
Brara.A01777 0.5kb downstream 0.5kb downstream 500 false A01: 10058314-10058813 Brassica rapa FPsc
Brara.A01777 1.0kb upstream 1.0kb upstream 2160 true A01: 10058814-10060973 Brassica rapa FPsc
Brara.A01777 1.0kb upstream 1.0kb upstream 1000 false A01: 10059974-10060973 Brassica rapa FPsc
Brara.A01777 1.0kb downstream 1.0kb downstream 2160 true A01: 10057814-10059973 Brassica rapa FPsc
Brara.A01777 1.0kb downstream 1.0kb downstream 1000 false A01: 10057814-10058813 Brassica rapa FPsc
Brara.A01777 2.0kb upstream 2.0kb upstream 3160 true A01: 10058814-10061973 Brassica rapa FPsc
Brara.A01777 2.0kb upstream 2.0kb upstream 2000 false A01: 10059974-10061973 Brassica rapa FPsc
Brara.A01777 2.0kb downstream 2.0kb downstream 3160 true A01: 10056814-10059973 Brassica rapa FPsc
Brara.A01777 2.0kb downstream 2.0kb downstream 2000 false A01: 10056814-10058813 Brassica rapa FPsc
Brara.A01777 5.0kb upstream 5.0kb upstream 6160 true A01: 10058814-10064973 Brassica rapa FPsc
Brara.A01777 5.0kb upstream 5.0kb upstream 5000 false A01: 10059974-10064973 Brassica rapa FPsc
Brara.A01777 5.0kb downstream 5.0kb downstream 6160 true A01: 10053814-10059973 Brassica rapa FPsc
Brara.A01777 5.0kb downstream 5.0kb downstream 5000 false A01: 10053814-10058813 Brassica rapa FPsc
Brara.A01777 10.0kb upstream 10.0kb upstream 11160 true A01: 10058814-10069973 Brassica rapa FPsc
Brara.A01777 10.0kb upstream 10.0kb upstream 10000 false A01: 10059974-10069973 Brassica rapa FPsc
Brara.A01777 10.0kb downstream 10.0kb downstream 11160 true A01: 10048814-10059973 Brassica rapa FPsc
Brara.A01777 10.0kb downstream 10.0kb downstream 10000 false A01: 10048814-10058813 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378831 5261 Brassicaceae View MSA
123836054 5264 Brassicales-Malvales View MSA
124340076 5266 SBM View MSA
124241119 5268 Malvidae View MSA
124068898 5270 Rosid View MSA
123741112 5271 Pentapetalae View MSA
122785907 5272 Eudicot View MSA
122042170 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier