Gene : Brara.G00449 B. rapa FPsc v1.3
Defline:  (1 of 5) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  449
Name:  ? Brara.G00449 Secondary Identifier:  ? PAC:30632202
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYOXYLATE-BYPASS Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6549 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G00449 0.5kb upstream 0.5kb upstream 5170 true A07: 5451851-5457020 Brassica rapa FPsc
Brara.G00449 0.5kb upstream 0.5kb upstream 500 false A07: 5451851-5452350 Brassica rapa FPsc
Brara.G00449 0.5kb downstream 0.5kb downstream 5170 true A07: 5452351-5457520 Brassica rapa FPsc
Brara.G00449 0.5kb downstream 0.5kb downstream 500 false A07: 5457021-5457520 Brassica rapa FPsc
Brara.G00449 1.0kb upstream 1.0kb upstream 5670 true A07: 5451351-5457020 Brassica rapa FPsc
Brara.G00449 1.0kb upstream 1.0kb upstream 1000 false A07: 5451351-5452350 Brassica rapa FPsc
Brara.G00449 1.0kb downstream 1.0kb downstream 5670 true A07: 5452351-5458020 Brassica rapa FPsc
Brara.G00449 1.0kb downstream 1.0kb downstream 1000 false A07: 5457021-5458020 Brassica rapa FPsc
Brara.G00449 2.0kb upstream 2.0kb upstream 6670 true A07: 5450351-5457020 Brassica rapa FPsc
Brara.G00449 2.0kb upstream 2.0kb upstream 2000 false A07: 5450351-5452350 Brassica rapa FPsc
Brara.G00449 2.0kb downstream 2.0kb downstream 6670 true A07: 5452351-5459020 Brassica rapa FPsc
Brara.G00449 2.0kb downstream 2.0kb downstream 2000 false A07: 5457021-5459020 Brassica rapa FPsc
Brara.G00449 5.0kb upstream 5.0kb upstream 9670 true A07: 5447351-5457020 Brassica rapa FPsc
Brara.G00449 5.0kb upstream 5.0kb upstream 5000 false A07: 5447351-5452350 Brassica rapa FPsc
Brara.G00449 5.0kb downstream 5.0kb downstream 9670 true A07: 5452351-5462020 Brassica rapa FPsc
Brara.G00449 5.0kb downstream 5.0kb downstream 5000 false A07: 5457021-5462020 Brassica rapa FPsc
Brara.G00449 10.0kb upstream 10.0kb upstream 14670 true A07: 5442351-5457020 Brassica rapa FPsc
Brara.G00449 10.0kb upstream 10.0kb upstream 10000 false A07: 5442351-5452350 Brassica rapa FPsc
Brara.G00449 10.0kb downstream 10.0kb downstream 14670 true A07: 5452351-5467020 Brassica rapa FPsc
Brara.G00449 10.0kb downstream 10.0kb downstream 10000 false A07: 5457021-5467020 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360824 5261 Brassicaceae View MSA
123840370 5264 Brassicales-Malvales View MSA
124350117 5266 SBM View MSA
124253803 5268 Malvidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier