Gene : Brara.G00341 B. rapa FPsc v1.3
Defline:  (1 of 4) PTHR11685:SF119 - E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED Genomic Order:  341
Name:  ? Brara.G00341 Secondary Identifier:  ? PAC:30634509
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G00341 0.5kb upstream 0.5kb upstream 3472 true A07: 3341644-3345115 Brassica rapa FPsc
Brara.G00341 0.5kb upstream 0.5kb upstream 500 false A07: 3341644-3342143 Brassica rapa FPsc
Brara.G00341 0.5kb downstream 0.5kb downstream 3472 true A07: 3342144-3345615 Brassica rapa FPsc
Brara.G00341 0.5kb downstream 0.5kb downstream 500 false A07: 3345116-3345615 Brassica rapa FPsc
Brara.G00341 1.0kb upstream 1.0kb upstream 3972 true A07: 3341144-3345115 Brassica rapa FPsc
Brara.G00341 1.0kb upstream 1.0kb upstream 1000 false A07: 3341144-3342143 Brassica rapa FPsc
Brara.G00341 1.0kb downstream 1.0kb downstream 3972 true A07: 3342144-3346115 Brassica rapa FPsc
Brara.G00341 1.0kb downstream 1.0kb downstream 1000 false A07: 3345116-3346115 Brassica rapa FPsc
Brara.G00341 2.0kb upstream 2.0kb upstream 4972 true A07: 3340144-3345115 Brassica rapa FPsc
Brara.G00341 2.0kb upstream 2.0kb upstream 2000 false A07: 3340144-3342143 Brassica rapa FPsc
Brara.G00341 2.0kb downstream 2.0kb downstream 4972 true A07: 3342144-3347115 Brassica rapa FPsc
Brara.G00341 2.0kb downstream 2.0kb downstream 2000 false A07: 3345116-3347115 Brassica rapa FPsc
Brara.G00341 5.0kb upstream 5.0kb upstream 7972 true A07: 3337144-3345115 Brassica rapa FPsc
Brara.G00341 5.0kb upstream 5.0kb upstream 5000 false A07: 3337144-3342143 Brassica rapa FPsc
Brara.G00341 5.0kb downstream 5.0kb downstream 7972 true A07: 3342144-3350115 Brassica rapa FPsc
Brara.G00341 5.0kb downstream 5.0kb downstream 5000 false A07: 3345116-3350115 Brassica rapa FPsc
Brara.G00341 10.0kb upstream 10.0kb upstream 12972 true A07: 3332144-3345115 Brassica rapa FPsc
Brara.G00341 10.0kb upstream 10.0kb upstream 10000 false A07: 3332144-3342143 Brassica rapa FPsc
Brara.G00341 10.0kb downstream 10.0kb downstream 12972 true A07: 3342144-3355115 Brassica rapa FPsc
Brara.G00341 10.0kb downstream 10.0kb downstream 10000 false A07: 3345116-3355115 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366088 5261 Brassicaceae View MSA
123837734 5264 Brassicales-Malvales View MSA
124338764 5266 SBM View MSA
124239816 5268 Malvidae View MSA
124064990 5270 Rosid View MSA
123740641 5271 Pentapetalae View MSA
122792906 5272 Eudicot View MSA
122046859 5273 Angiosperm View MSA
121343815 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier