Gene : Brara.D01183 B. rapa FPsc v1.3
Defline:  (1 of 3) 4.2.1.122 - Tryptophan synthase (indole-salvaging) / Tryptophan synthase beta-2 Genomic Order:  1183
Name:  ? Brara.D01183 Secondary Identifier:  ? PAC:30622426
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRPSYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D01183 0.5kb upstream 0.5kb upstream 3057 true A04: 10875339-10878395 Brassica rapa FPsc
Brara.D01183 0.5kb upstream 0.5kb upstream 500 false A04: 10877896-10878395 Brassica rapa FPsc
Brara.D01183 0.5kb downstream 0.5kb downstream 3057 true A04: 10874839-10877895 Brassica rapa FPsc
Brara.D01183 0.5kb downstream 0.5kb downstream 500 false A04: 10874839-10875338 Brassica rapa FPsc
Brara.D01183 1.0kb upstream 1.0kb upstream 3557 true A04: 10875339-10878895 Brassica rapa FPsc
Brara.D01183 1.0kb upstream 1.0kb upstream 1000 false A04: 10877896-10878895 Brassica rapa FPsc
Brara.D01183 1.0kb downstream 1.0kb downstream 3557 true A04: 10874339-10877895 Brassica rapa FPsc
Brara.D01183 1.0kb downstream 1.0kb downstream 1000 false A04: 10874339-10875338 Brassica rapa FPsc
Brara.D01183 2.0kb upstream 2.0kb upstream 4557 true A04: 10875339-10879895 Brassica rapa FPsc
Brara.D01183 2.0kb upstream 2.0kb upstream 2000 false A04: 10877896-10879895 Brassica rapa FPsc
Brara.D01183 2.0kb downstream 2.0kb downstream 4557 true A04: 10873339-10877895 Brassica rapa FPsc
Brara.D01183 2.0kb downstream 2.0kb downstream 2000 false A04: 10873339-10875338 Brassica rapa FPsc
Brara.D01183 5.0kb upstream 5.0kb upstream 7557 true A04: 10875339-10882895 Brassica rapa FPsc
Brara.D01183 5.0kb upstream 5.0kb upstream 5000 false A04: 10877896-10882895 Brassica rapa FPsc
Brara.D01183 5.0kb downstream 5.0kb downstream 7557 true A04: 10870339-10877895 Brassica rapa FPsc
Brara.D01183 5.0kb downstream 5.0kb downstream 5000 false A04: 10870339-10875338 Brassica rapa FPsc
Brara.D01183 10.0kb upstream 10.0kb upstream 12557 true A04: 10875339-10887895 Brassica rapa FPsc
Brara.D01183 10.0kb upstream 10.0kb upstream 10000 false A04: 10877896-10887895 Brassica rapa FPsc
Brara.D01183 10.0kb downstream 10.0kb downstream 12557 true A04: 10865339-10877895 Brassica rapa FPsc
Brara.D01183 10.0kb downstream 10.0kb downstream 10000 false A04: 10865339-10875338 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361584 5261 Brassicaceae View MSA
123840024 5264 Brassicales-Malvales View MSA
124344821 5266 SBM View MSA
124242166 5268 Malvidae View MSA
124065122 5270 Rosid View MSA
123740538 5271 Pentapetalae View MSA
122790993 5272 Eudicot View MSA
122043348 5273 Angiosperm View MSA
121348084 5274 Embryophyte View MSA
123380724 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier