Gene : Brara.F03708 B. rapa FPsc v1.3
Defline:  (1 of 76) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  3708
Name:  ? Brara.F03708 Secondary Identifier:  ? PAC:30628703
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F03708 0.5kb upstream 0.5kb upstream 4571 true A06: 28177802-28182372 Brassica rapa FPsc
Brara.F03708 0.5kb upstream 0.5kb upstream 500 false A06: 28177802-28178301 Brassica rapa FPsc
Brara.F03708 0.5kb downstream 0.5kb downstream 4571 true A06: 28178302-28182872 Brassica rapa FPsc
Brara.F03708 0.5kb downstream 0.5kb downstream 500 false A06: 28182373-28182872 Brassica rapa FPsc
Brara.F03708 1.0kb upstream 1.0kb upstream 5071 true A06: 28177302-28182372 Brassica rapa FPsc
Brara.F03708 1.0kb upstream 1.0kb upstream 1000 false A06: 28177302-28178301 Brassica rapa FPsc
Brara.F03708 1.0kb downstream 1.0kb downstream 5071 true A06: 28178302-28183372 Brassica rapa FPsc
Brara.F03708 1.0kb downstream 1.0kb downstream 1000 false A06: 28182373-28183372 Brassica rapa FPsc
Brara.F03708 2.0kb upstream 2.0kb upstream 6071 true A06: 28176302-28182372 Brassica rapa FPsc
Brara.F03708 2.0kb upstream 2.0kb upstream 2000 false A06: 28176302-28178301 Brassica rapa FPsc
Brara.F03708 2.0kb downstream 2.0kb downstream 6071 true A06: 28178302-28184372 Brassica rapa FPsc
Brara.F03708 2.0kb downstream 2.0kb downstream 2000 false A06: 28182373-28184372 Brassica rapa FPsc
Brara.F03708 5.0kb upstream 5.0kb upstream 9071 true A06: 28173302-28182372 Brassica rapa FPsc
Brara.F03708 5.0kb upstream 5.0kb upstream 5000 false A06: 28173302-28178301 Brassica rapa FPsc
Brara.F03708 5.0kb downstream 5.0kb downstream 9071 true A06: 28178302-28187372 Brassica rapa FPsc
Brara.F03708 5.0kb downstream 5.0kb downstream 5000 false A06: 28182373-28187372 Brassica rapa FPsc
Brara.F03708 10.0kb upstream 10.0kb upstream 14071 true A06: 28168302-28182372 Brassica rapa FPsc
Brara.F03708 10.0kb upstream 10.0kb upstream 10000 false A06: 28168302-28178301 Brassica rapa FPsc
Brara.F03708 10.0kb downstream 10.0kb downstream 14071 true A06: 28178302-28192372 Brassica rapa FPsc
Brara.F03708 10.0kb downstream 10.0kb downstream 10000 false A06: 28182373-28192372 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363364 5261 Brassicaceae View MSA
123841125 5264 Brassicales-Malvales View MSA
124351120 5266 SBM View MSA
124249641 5268 Malvidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier