Gene : Brara.A02841 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  2841
Name:  ? Brara.A02841 Secondary Identifier:  ? PAC:30636828
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7511 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A02841 0.5kb upstream 0.5kb upstream 2743 true A01: 24178761-24181503 Brassica rapa FPsc
Brara.A02841 0.5kb upstream 0.5kb upstream 500 false A01: 24181004-24181503 Brassica rapa FPsc
Brara.A02841 0.5kb downstream 0.5kb downstream 2743 true A01: 24178261-24181003 Brassica rapa FPsc
Brara.A02841 0.5kb downstream 0.5kb downstream 500 false A01: 24178261-24178760 Brassica rapa FPsc
Brara.A02841 1.0kb upstream 1.0kb upstream 3243 true A01: 24178761-24182003 Brassica rapa FPsc
Brara.A02841 1.0kb upstream 1.0kb upstream 1000 false A01: 24181004-24182003 Brassica rapa FPsc
Brara.A02841 1.0kb downstream 1.0kb downstream 3243 true A01: 24177761-24181003 Brassica rapa FPsc
Brara.A02841 1.0kb downstream 1.0kb downstream 1000 false A01: 24177761-24178760 Brassica rapa FPsc
Brara.A02841 2.0kb upstream 2.0kb upstream 4243 true A01: 24178761-24183003 Brassica rapa FPsc
Brara.A02841 2.0kb upstream 2.0kb upstream 2000 false A01: 24181004-24183003 Brassica rapa FPsc
Brara.A02841 2.0kb downstream 2.0kb downstream 4243 true A01: 24176761-24181003 Brassica rapa FPsc
Brara.A02841 2.0kb downstream 2.0kb downstream 2000 false A01: 24176761-24178760 Brassica rapa FPsc
Brara.A02841 5.0kb upstream 5.0kb upstream 7243 true A01: 24178761-24186003 Brassica rapa FPsc
Brara.A02841 5.0kb upstream 5.0kb upstream 5000 false A01: 24181004-24186003 Brassica rapa FPsc
Brara.A02841 5.0kb downstream 5.0kb downstream 7243 true A01: 24173761-24181003 Brassica rapa FPsc
Brara.A02841 5.0kb downstream 5.0kb downstream 5000 false A01: 24173761-24178760 Brassica rapa FPsc
Brara.A02841 10.0kb upstream 10.0kb upstream 12243 true A01: 24178761-24191003 Brassica rapa FPsc
Brara.A02841 10.0kb upstream 10.0kb upstream 10000 false A01: 24181004-24191003 Brassica rapa FPsc
Brara.A02841 10.0kb downstream 10.0kb downstream 12243 true A01: 24168761-24181003 Brassica rapa FPsc
Brara.A02841 10.0kb downstream 10.0kb downstream 10000 false A01: 24168761-24178760 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378877 5261 Brassicaceae View MSA
123835862 5264 Brassicales-Malvales View MSA
124340184 5266 SBM View MSA
124254333 5268 Malvidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

1 Strain

DB identifier