Gene : Brara.G01077 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR13871:SF43 - CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN Genomic Order:  1077
Name:  ? Brara.G01077 Secondary Identifier:  ? PAC:30635490
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-7039 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G01077 0.5kb upstream 0.5kb upstream 2434 true A07: 12092012-12094445 Brassica rapa FPsc
Brara.G01077 0.5kb upstream 0.5kb upstream 500 false A07: 12092012-12092511 Brassica rapa FPsc
Brara.G01077 0.5kb downstream 0.5kb downstream 2434 true A07: 12092512-12094945 Brassica rapa FPsc
Brara.G01077 0.5kb downstream 0.5kb downstream 500 false A07: 12094446-12094945 Brassica rapa FPsc
Brara.G01077 1.0kb upstream 1.0kb upstream 2934 true A07: 12091512-12094445 Brassica rapa FPsc
Brara.G01077 1.0kb upstream 1.0kb upstream 1000 false A07: 12091512-12092511 Brassica rapa FPsc
Brara.G01077 1.0kb downstream 1.0kb downstream 2934 true A07: 12092512-12095445 Brassica rapa FPsc
Brara.G01077 1.0kb downstream 1.0kb downstream 1000 false A07: 12094446-12095445 Brassica rapa FPsc
Brara.G01077 2.0kb upstream 2.0kb upstream 3934 true A07: 12090512-12094445 Brassica rapa FPsc
Brara.G01077 2.0kb upstream 2.0kb upstream 2000 false A07: 12090512-12092511 Brassica rapa FPsc
Brara.G01077 2.0kb downstream 2.0kb downstream 3934 true A07: 12092512-12096445 Brassica rapa FPsc
Brara.G01077 2.0kb downstream 2.0kb downstream 2000 false A07: 12094446-12096445 Brassica rapa FPsc
Brara.G01077 5.0kb upstream 5.0kb upstream 6934 true A07: 12087512-12094445 Brassica rapa FPsc
Brara.G01077 5.0kb upstream 5.0kb upstream 5000 false A07: 12087512-12092511 Brassica rapa FPsc
Brara.G01077 5.0kb downstream 5.0kb downstream 6934 true A07: 12092512-12099445 Brassica rapa FPsc
Brara.G01077 5.0kb downstream 5.0kb downstream 5000 false A07: 12094446-12099445 Brassica rapa FPsc
Brara.G01077 10.0kb upstream 10.0kb upstream 11934 true A07: 12082512-12094445 Brassica rapa FPsc
Brara.G01077 10.0kb upstream 10.0kb upstream 10000 false A07: 12082512-12092511 Brassica rapa FPsc
Brara.G01077 10.0kb downstream 10.0kb downstream 11934 true A07: 12092512-12104445 Brassica rapa FPsc
Brara.G01077 10.0kb downstream 10.0kb downstream 10000 false A07: 12094446-12104445 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122351933 5261 Brassicaceae Singleton cluster - no MSA
123840186 5264 Brassicales-Malvales View MSA
124340169 5266 SBM View MSA
124239800 5268 Malvidae View MSA
124061388 5270 Rosid View MSA
123737887 5271 Pentapetalae View MSA
122796546 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier