Gene : Brara.G00978 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR31375:SF29 - PECTIN LYASE-LIKE PROTEIN-RELATED Genomic Order:  978
Name:  ? Brara.G00978 Secondary Identifier:  ? PAC:30634008
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G00978 0.5kb upstream 0.5kb upstream 2997 true A07: 11363712-11366708 Brassica rapa FPsc
Brara.G00978 0.5kb upstream 0.5kb upstream 500 false A07: 11366209-11366708 Brassica rapa FPsc
Brara.G00978 0.5kb downstream 0.5kb downstream 2997 true A07: 11363212-11366208 Brassica rapa FPsc
Brara.G00978 0.5kb downstream 0.5kb downstream 500 false A07: 11363212-11363711 Brassica rapa FPsc
Brara.G00978 1.0kb upstream 1.0kb upstream 3497 true A07: 11363712-11367208 Brassica rapa FPsc
Brara.G00978 1.0kb upstream 1.0kb upstream 1000 false A07: 11366209-11367208 Brassica rapa FPsc
Brara.G00978 1.0kb downstream 1.0kb downstream 3497 true A07: 11362712-11366208 Brassica rapa FPsc
Brara.G00978 1.0kb downstream 1.0kb downstream 1000 false A07: 11362712-11363711 Brassica rapa FPsc
Brara.G00978 2.0kb upstream 2.0kb upstream 4497 true A07: 11363712-11368208 Brassica rapa FPsc
Brara.G00978 2.0kb upstream 2.0kb upstream 2000 false A07: 11366209-11368208 Brassica rapa FPsc
Brara.G00978 2.0kb downstream 2.0kb downstream 4497 true A07: 11361712-11366208 Brassica rapa FPsc
Brara.G00978 2.0kb downstream 2.0kb downstream 2000 false A07: 11361712-11363711 Brassica rapa FPsc
Brara.G00978 5.0kb upstream 5.0kb upstream 7497 true A07: 11363712-11371208 Brassica rapa FPsc
Brara.G00978 5.0kb upstream 5.0kb upstream 5000 false A07: 11366209-11371208 Brassica rapa FPsc
Brara.G00978 5.0kb downstream 5.0kb downstream 7497 true A07: 11358712-11366208 Brassica rapa FPsc
Brara.G00978 5.0kb downstream 5.0kb downstream 5000 false A07: 11358712-11363711 Brassica rapa FPsc
Brara.G00978 10.0kb upstream 10.0kb upstream 12497 true A07: 11363712-11376208 Brassica rapa FPsc
Brara.G00978 10.0kb upstream 10.0kb upstream 10000 false A07: 11366209-11376208 Brassica rapa FPsc
Brara.G00978 10.0kb downstream 10.0kb downstream 12497 true A07: 11353712-11366208 Brassica rapa FPsc
Brara.G00978 10.0kb downstream 10.0kb downstream 10000 false A07: 11353712-11363711 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378223 5261 Brassicaceae View MSA
123801793 5264 Brassicales-Malvales View MSA
124299053 5266 SBM View MSA
124254286 5268 Malvidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier