Gene : Brara.D01861 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR11879//PTHR11879:SF18 - ASPARTATE AMINOTRANSFERASE Genomic Order:  1861
Name:  ? Brara.D01861 Secondary Identifier:  ? PAC:30621001
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc ASPARTATE-DEG1-PWY Brassica rapa FPsc pathologic  
BrapaFPsc ASPARTATESYN-PWY Brassica rapa FPsc pathologic  
BrapaFPsc PWY-3001 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7115 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-7117 Brassica rapa FPsc pathologic  
BrapaFPsc THRESYN-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.D01861 0.5kb upstream 0.5kb upstream 3546 true A04: 15925518-15929063 Brassica rapa FPsc
Brara.D01861 0.5kb upstream 0.5kb upstream 500 false A04: 15925518-15926017 Brassica rapa FPsc
Brara.D01861 0.5kb downstream 0.5kb downstream 3546 true A04: 15926018-15929563 Brassica rapa FPsc
Brara.D01861 0.5kb downstream 0.5kb downstream 500 false A04: 15929064-15929563 Brassica rapa FPsc
Brara.D01861 1.0kb upstream 1.0kb upstream 4046 true A04: 15925018-15929063 Brassica rapa FPsc
Brara.D01861 1.0kb upstream 1.0kb upstream 1000 false A04: 15925018-15926017 Brassica rapa FPsc
Brara.D01861 1.0kb downstream 1.0kb downstream 4046 true A04: 15926018-15930063 Brassica rapa FPsc
Brara.D01861 1.0kb downstream 1.0kb downstream 1000 false A04: 15929064-15930063 Brassica rapa FPsc
Brara.D01861 2.0kb upstream 2.0kb upstream 5046 true A04: 15924018-15929063 Brassica rapa FPsc
Brara.D01861 2.0kb upstream 2.0kb upstream 2000 false A04: 15924018-15926017 Brassica rapa FPsc
Brara.D01861 2.0kb downstream 2.0kb downstream 5046 true A04: 15926018-15931063 Brassica rapa FPsc
Brara.D01861 2.0kb downstream 2.0kb downstream 2000 false A04: 15929064-15931063 Brassica rapa FPsc
Brara.D01861 5.0kb upstream 5.0kb upstream 8046 true A04: 15921018-15929063 Brassica rapa FPsc
Brara.D01861 5.0kb upstream 5.0kb upstream 5000 false A04: 15921018-15926017 Brassica rapa FPsc
Brara.D01861 5.0kb downstream 5.0kb downstream 8046 true A04: 15926018-15934063 Brassica rapa FPsc
Brara.D01861 5.0kb downstream 5.0kb downstream 5000 false A04: 15929064-15934063 Brassica rapa FPsc
Brara.D01861 10.0kb upstream 10.0kb upstream 13046 true A04: 15916018-15929063 Brassica rapa FPsc
Brara.D01861 10.0kb upstream 10.0kb upstream 10000 false A04: 15916018-15926017 Brassica rapa FPsc
Brara.D01861 10.0kb downstream 10.0kb downstream 13046 true A04: 15926018-15939063 Brassica rapa FPsc
Brara.D01861 10.0kb downstream 10.0kb downstream 10000 false A04: 15929064-15939063 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122348499 5261 Brassicaceae Singleton cluster - no MSA
123839385 5264 Brassicales-Malvales View MSA
124344803 5266 SBM View MSA
124241659 5268 Malvidae View MSA
124063482 5270 Rosid View MSA
123737145 5271 Pentapetalae View MSA
122793092 5272 Eudicot View MSA
122046072 5273 Angiosperm View MSA
121344214 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier