Gene : Brara.G01816 B. rapa FPsc v1.3
Defline:  (1 of 5) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  1816
Name:  ? Brara.G01816 Secondary Identifier:  ? PAC:30635956
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc GLYOXYLATE-BYPASS Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5464 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-561 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-5690 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-6549 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G01816 0.5kb upstream 0.5kb upstream 3514 true A07: 17119172-17122685 Brassica rapa FPsc
Brara.G01816 0.5kb upstream 0.5kb upstream 500 false A07: 17122186-17122685 Brassica rapa FPsc
Brara.G01816 0.5kb downstream 0.5kb downstream 3514 true A07: 17118672-17122185 Brassica rapa FPsc
Brara.G01816 0.5kb downstream 0.5kb downstream 500 false A07: 17118672-17119171 Brassica rapa FPsc
Brara.G01816 1.0kb upstream 1.0kb upstream 4014 true A07: 17119172-17123185 Brassica rapa FPsc
Brara.G01816 1.0kb upstream 1.0kb upstream 1000 false A07: 17122186-17123185 Brassica rapa FPsc
Brara.G01816 1.0kb downstream 1.0kb downstream 4014 true A07: 17118172-17122185 Brassica rapa FPsc
Brara.G01816 1.0kb downstream 1.0kb downstream 1000 false A07: 17118172-17119171 Brassica rapa FPsc
Brara.G01816 2.0kb upstream 2.0kb upstream 5014 true A07: 17119172-17124185 Brassica rapa FPsc
Brara.G01816 2.0kb upstream 2.0kb upstream 2000 false A07: 17122186-17124185 Brassica rapa FPsc
Brara.G01816 2.0kb downstream 2.0kb downstream 5014 true A07: 17117172-17122185 Brassica rapa FPsc
Brara.G01816 2.0kb downstream 2.0kb downstream 2000 false A07: 17117172-17119171 Brassica rapa FPsc
Brara.G01816 5.0kb upstream 5.0kb upstream 8014 true A07: 17119172-17127185 Brassica rapa FPsc
Brara.G01816 5.0kb upstream 5.0kb upstream 5000 false A07: 17122186-17127185 Brassica rapa FPsc
Brara.G01816 5.0kb downstream 5.0kb downstream 8014 true A07: 17114172-17122185 Brassica rapa FPsc
Brara.G01816 5.0kb downstream 5.0kb downstream 5000 false A07: 17114172-17119171 Brassica rapa FPsc
Brara.G01816 10.0kb upstream 10.0kb upstream 13014 true A07: 17119172-17132185 Brassica rapa FPsc
Brara.G01816 10.0kb upstream 10.0kb upstream 10000 false A07: 17122186-17132185 Brassica rapa FPsc
Brara.G01816 10.0kb downstream 10.0kb downstream 13014 true A07: 17109172-17122185 Brassica rapa FPsc
Brara.G01816 10.0kb downstream 10.0kb downstream 10000 false A07: 17109172-17119171 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122352053 5261 Brassicaceae Singleton cluster - no MSA
123790838 5264 Brassicales-Malvales Singleton cluster - no MSA
124288773 5266 SBM Singleton cluster - no MSA
124251480 5268 Malvidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier