Gene : Brara.A03197 B. rapa FPsc v1.3
Defline:  (1 of 5) PTHR31707:SF55 - PECTINESTERASE 2-RELATED Genomic Order:  3197
Name:  ? Brara.A03197 Secondary Identifier:  ? PAC:30639412
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A03197 0.5kb upstream 0.5kb upstream 3653 true A01: 26758418-26762070 Brassica rapa FPsc
Brara.A03197 0.5kb upstream 0.5kb upstream 500 false A01: 26758418-26758917 Brassica rapa FPsc
Brara.A03197 0.5kb downstream 0.5kb downstream 3653 true A01: 26758918-26762570 Brassica rapa FPsc
Brara.A03197 0.5kb downstream 0.5kb downstream 500 false A01: 26762071-26762570 Brassica rapa FPsc
Brara.A03197 1.0kb upstream 1.0kb upstream 4153 true A01: 26757918-26762070 Brassica rapa FPsc
Brara.A03197 1.0kb upstream 1.0kb upstream 1000 false A01: 26757918-26758917 Brassica rapa FPsc
Brara.A03197 1.0kb downstream 1.0kb downstream 4153 true A01: 26758918-26763070 Brassica rapa FPsc
Brara.A03197 1.0kb downstream 1.0kb downstream 1000 false A01: 26762071-26763070 Brassica rapa FPsc
Brara.A03197 2.0kb upstream 2.0kb upstream 5153 true A01: 26756918-26762070 Brassica rapa FPsc
Brara.A03197 2.0kb upstream 2.0kb upstream 2000 false A01: 26756918-26758917 Brassica rapa FPsc
Brara.A03197 2.0kb downstream 2.0kb downstream 5153 true A01: 26758918-26764070 Brassica rapa FPsc
Brara.A03197 2.0kb downstream 2.0kb downstream 2000 false A01: 26762071-26764070 Brassica rapa FPsc
Brara.A03197 5.0kb upstream 5.0kb upstream 8153 true A01: 26753918-26762070 Brassica rapa FPsc
Brara.A03197 5.0kb upstream 5.0kb upstream 5000 false A01: 26753918-26758917 Brassica rapa FPsc
Brara.A03197 5.0kb downstream 5.0kb downstream 8153 true A01: 26758918-26767070 Brassica rapa FPsc
Brara.A03197 5.0kb downstream 5.0kb downstream 5000 false A01: 26762071-26767070 Brassica rapa FPsc
Brara.A03197 10.0kb upstream 10.0kb upstream 13153 true A01: 26748918-26762070 Brassica rapa FPsc
Brara.A03197 10.0kb upstream 10.0kb upstream 10000 false A01: 26748918-26758917 Brassica rapa FPsc
Brara.A03197 10.0kb downstream 10.0kb downstream 13153 true A01: 26758918-26772070 Brassica rapa FPsc
Brara.A03197 10.0kb downstream 10.0kb downstream 10000 false A01: 26762071-26772070 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122352905 5261 Brassicaceae Singleton cluster - no MSA
123842812 5264 Brassicales-Malvales View MSA
124350468 5266 SBM View MSA
124246887 5268 Malvidae View MSA
124060766 5270 Rosid View MSA
123741705 5271 Pentapetalae View MSA
122792272 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier