Gene : Brara.A03242 B. rapa FPsc v1.3
Defline:  (1 of 1) PTHR10742:SF210 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 Genomic Order:  3242
Name:  ? Brara.A03242 Secondary Identifier:  ? PAC:30640032
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-6441 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A03242 0.5kb upstream 0.5kb upstream 3171 true A01: 27060790-27063960 Brassica rapa FPsc
Brara.A03242 0.5kb upstream 0.5kb upstream 500 false A01: 27060790-27061289 Brassica rapa FPsc
Brara.A03242 0.5kb downstream 0.5kb downstream 3171 true A01: 27061290-27064460 Brassica rapa FPsc
Brara.A03242 0.5kb downstream 0.5kb downstream 500 false A01: 27063961-27064460 Brassica rapa FPsc
Brara.A03242 1.0kb upstream 1.0kb upstream 3671 true A01: 27060290-27063960 Brassica rapa FPsc
Brara.A03242 1.0kb upstream 1.0kb upstream 1000 false A01: 27060290-27061289 Brassica rapa FPsc
Brara.A03242 1.0kb downstream 1.0kb downstream 3671 true A01: 27061290-27064960 Brassica rapa FPsc
Brara.A03242 1.0kb downstream 1.0kb downstream 1000 false A01: 27063961-27064960 Brassica rapa FPsc
Brara.A03242 2.0kb upstream 2.0kb upstream 4671 true A01: 27059290-27063960 Brassica rapa FPsc
Brara.A03242 2.0kb upstream 2.0kb upstream 2000 false A01: 27059290-27061289 Brassica rapa FPsc
Brara.A03242 2.0kb downstream 2.0kb downstream 4671 true A01: 27061290-27065960 Brassica rapa FPsc
Brara.A03242 2.0kb downstream 2.0kb downstream 2000 false A01: 27063961-27065960 Brassica rapa FPsc
Brara.A03242 5.0kb upstream 5.0kb upstream 7671 true A01: 27056290-27063960 Brassica rapa FPsc
Brara.A03242 5.0kb upstream 5.0kb upstream 5000 false A01: 27056290-27061289 Brassica rapa FPsc
Brara.A03242 5.0kb downstream 5.0kb downstream 7671 true A01: 27061290-27068960 Brassica rapa FPsc
Brara.A03242 5.0kb downstream 5.0kb downstream 5000 false A01: 27063961-27068960 Brassica rapa FPsc
Brara.A03242 10.0kb upstream 10.0kb upstream 12671 true A01: 27051290-27063960 Brassica rapa FPsc
Brara.A03242 10.0kb upstream 10.0kb upstream 10000 false A01: 27051290-27061289 Brassica rapa FPsc
Brara.A03242 10.0kb downstream 10.0kb downstream 12671 true A01: 27061290-27073960 Brassica rapa FPsc
Brara.A03242 10.0kb downstream 10.0kb downstream 10000 false A01: 27063961-27073960 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374256 5261 Brassicaceae View MSA
123829075 5264 Brassicales-Malvales View MSA
124336597 5266 SBM View MSA
124242009 5268 Malvidae View MSA
124065563 5270 Rosid View MSA
123738735 5271 Pentapetalae View MSA
122791879 5272 Eudicot View MSA
122041755 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier