Gene : Brara.G01601 B. rapa FPsc v1.3
Defline:  (1 of 3) PTHR31689:SF0 - DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC Genomic Order:  1601
Name:  ? Brara.G01601 Secondary Identifier:  ? PAC:30635930
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-5097 Brassica rapa FPsc pathologic  
BrapaFPsc PWY-724 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G01601 0.5kb upstream 0.5kb upstream 2836 true A07: 15800050-15802885 Brassica rapa FPsc
Brara.G01601 0.5kb upstream 0.5kb upstream 500 false A07: 15800050-15800549 Brassica rapa FPsc
Brara.G01601 0.5kb downstream 0.5kb downstream 2836 true A07: 15800550-15803385 Brassica rapa FPsc
Brara.G01601 0.5kb downstream 0.5kb downstream 500 false A07: 15802886-15803385 Brassica rapa FPsc
Brara.G01601 1.0kb upstream 1.0kb upstream 3336 true A07: 15799550-15802885 Brassica rapa FPsc
Brara.G01601 1.0kb upstream 1.0kb upstream 1000 false A07: 15799550-15800549 Brassica rapa FPsc
Brara.G01601 1.0kb downstream 1.0kb downstream 3336 true A07: 15800550-15803885 Brassica rapa FPsc
Brara.G01601 1.0kb downstream 1.0kb downstream 1000 false A07: 15802886-15803885 Brassica rapa FPsc
Brara.G01601 2.0kb upstream 2.0kb upstream 4336 true A07: 15798550-15802885 Brassica rapa FPsc
Brara.G01601 2.0kb upstream 2.0kb upstream 2000 false A07: 15798550-15800549 Brassica rapa FPsc
Brara.G01601 2.0kb downstream 2.0kb downstream 4336 true A07: 15800550-15804885 Brassica rapa FPsc
Brara.G01601 2.0kb downstream 2.0kb downstream 2000 false A07: 15802886-15804885 Brassica rapa FPsc
Brara.G01601 5.0kb upstream 5.0kb upstream 7336 true A07: 15795550-15802885 Brassica rapa FPsc
Brara.G01601 5.0kb upstream 5.0kb upstream 5000 false A07: 15795550-15800549 Brassica rapa FPsc
Brara.G01601 5.0kb downstream 5.0kb downstream 7336 true A07: 15800550-15807885 Brassica rapa FPsc
Brara.G01601 5.0kb downstream 5.0kb downstream 5000 false A07: 15802886-15807885 Brassica rapa FPsc
Brara.G01601 10.0kb upstream 10.0kb upstream 12336 true A07: 15790550-15802885 Brassica rapa FPsc
Brara.G01601 10.0kb upstream 10.0kb upstream 10000 false A07: 15790550-15800549 Brassica rapa FPsc
Brara.G01601 10.0kb downstream 10.0kb downstream 12336 true A07: 15800550-15812885 Brassica rapa FPsc
Brara.G01601 10.0kb downstream 10.0kb downstream 10000 false A07: 15802886-15812885 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122352045 5261 Brassicaceae Singleton cluster - no MSA
123790830 5264 Brassicales-Malvales Singleton cluster - no MSA
124288765 5266 SBM Singleton cluster - no MSA
124255799 5268 Malvidae View MSA
123953307 5270 Rosid View MSA
123755578 5271 Pentapetalae View MSA
122776820 5272 Eudicot View MSA
122047257 5273 Angiosperm View MSA
121347599 5274 Embryophyte View MSA
123423863 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier