Gene : Brara.G01446 B. rapa FPsc v1.3
Defline:  (1 of 5) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Genomic Order:  1446
Name:  ? Brara.G01446 Secondary Identifier:  ? PAC:30635318
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc TRNA-CHARGING-PWY Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.G01446 0.5kb upstream 0.5kb upstream 2886 true A07: 14764465-14767350 Brassica rapa FPsc
Brara.G01446 0.5kb upstream 0.5kb upstream 500 false A07: 14766851-14767350 Brassica rapa FPsc
Brara.G01446 0.5kb downstream 0.5kb downstream 2886 true A07: 14763965-14766850 Brassica rapa FPsc
Brara.G01446 0.5kb downstream 0.5kb downstream 500 false A07: 14763965-14764464 Brassica rapa FPsc
Brara.G01446 1.0kb upstream 1.0kb upstream 3386 true A07: 14764465-14767850 Brassica rapa FPsc
Brara.G01446 1.0kb upstream 1.0kb upstream 1000 false A07: 14766851-14767850 Brassica rapa FPsc
Brara.G01446 1.0kb downstream 1.0kb downstream 3386 true A07: 14763465-14766850 Brassica rapa FPsc
Brara.G01446 1.0kb downstream 1.0kb downstream 1000 false A07: 14763465-14764464 Brassica rapa FPsc
Brara.G01446 2.0kb upstream 2.0kb upstream 4386 true A07: 14764465-14768850 Brassica rapa FPsc
Brara.G01446 2.0kb upstream 2.0kb upstream 2000 false A07: 14766851-14768850 Brassica rapa FPsc
Brara.G01446 2.0kb downstream 2.0kb downstream 4386 true A07: 14762465-14766850 Brassica rapa FPsc
Brara.G01446 2.0kb downstream 2.0kb downstream 2000 false A07: 14762465-14764464 Brassica rapa FPsc
Brara.G01446 5.0kb upstream 5.0kb upstream 7386 true A07: 14764465-14771850 Brassica rapa FPsc
Brara.G01446 5.0kb upstream 5.0kb upstream 5000 false A07: 14766851-14771850 Brassica rapa FPsc
Brara.G01446 5.0kb downstream 5.0kb downstream 7386 true A07: 14759465-14766850 Brassica rapa FPsc
Brara.G01446 5.0kb downstream 5.0kb downstream 5000 false A07: 14759465-14764464 Brassica rapa FPsc
Brara.G01446 10.0kb upstream 10.0kb upstream 12386 true A07: 14764465-14776850 Brassica rapa FPsc
Brara.G01446 10.0kb upstream 10.0kb upstream 10000 false A07: 14766851-14776850 Brassica rapa FPsc
Brara.G01446 10.0kb downstream 10.0kb downstream 12386 true A07: 14754465-14766850 Brassica rapa FPsc
Brara.G01446 10.0kb downstream 10.0kb downstream 10000 false A07: 14754465-14764464 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374120 5261 Brassicaceae View MSA
123830894 5264 Brassicales-Malvales View MSA
124340438 5266 SBM View MSA
124250049 5268 Malvidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier