Gene : Brara.A03680 B. rapa FPsc v1.3
Defline:  (1 of 2) PTHR31852:SF3 - LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY Genomic Order:  3680
Name:  ? Brara.A03680 Secondary Identifier:  ? PAC:30639485
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.A03680 0.5kb upstream 0.5kb upstream 1073 true A01: 29580506-29581578 Brassica rapa FPsc
Brara.A03680 0.5kb upstream 0.5kb upstream 500 false A01: 29580506-29581005 Brassica rapa FPsc
Brara.A03680 0.5kb downstream 0.5kb downstream 1073 true A01: 29581006-29582078 Brassica rapa FPsc
Brara.A03680 0.5kb downstream 0.5kb downstream 500 false A01: 29581579-29582078 Brassica rapa FPsc
Brara.A03680 1.0kb upstream 1.0kb upstream 1573 true A01: 29580006-29581578 Brassica rapa FPsc
Brara.A03680 1.0kb upstream 1.0kb upstream 1000 false A01: 29580006-29581005 Brassica rapa FPsc
Brara.A03680 1.0kb downstream 1.0kb downstream 1573 true A01: 29581006-29582578 Brassica rapa FPsc
Brara.A03680 1.0kb downstream 1.0kb downstream 1000 false A01: 29581579-29582578 Brassica rapa FPsc
Brara.A03680 2.0kb upstream 2.0kb upstream 2573 true A01: 29579006-29581578 Brassica rapa FPsc
Brara.A03680 2.0kb upstream 2.0kb upstream 2000 false A01: 29579006-29581005 Brassica rapa FPsc
Brara.A03680 2.0kb downstream 2.0kb downstream 2573 true A01: 29581006-29583578 Brassica rapa FPsc
Brara.A03680 2.0kb downstream 2.0kb downstream 2000 false A01: 29581579-29583578 Brassica rapa FPsc
Brara.A03680 5.0kb upstream 5.0kb upstream 5573 true A01: 29576006-29581578 Brassica rapa FPsc
Brara.A03680 5.0kb upstream 5.0kb upstream 5000 false A01: 29576006-29581005 Brassica rapa FPsc
Brara.A03680 5.0kb downstream 5.0kb downstream 5573 true A01: 29581006-29586578 Brassica rapa FPsc
Brara.A03680 5.0kb downstream 5.0kb downstream 5000 false A01: 29581579-29586578 Brassica rapa FPsc
Brara.A03680 10.0kb upstream 10.0kb upstream 10573 true A01: 29571006-29581578 Brassica rapa FPsc
Brara.A03680 10.0kb upstream 10.0kb upstream 10000 false A01: 29571006-29581005 Brassica rapa FPsc
Brara.A03680 10.0kb downstream 10.0kb downstream 10573 true A01: 29581006-29591578 Brassica rapa FPsc
Brara.A03680 10.0kb downstream 10.0kb downstream 10000 false A01: 29581579-29591578 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122352927 5261 Brassicaceae Singleton cluster - no MSA
123791577 5264 Brassicales-Malvales Singleton cluster - no MSA
124289486 5266 SBM Singleton cluster - no MSA
124142816 5268 Malvidae Singleton cluster - no MSA
124061376 5270 Rosid View MSA
123743107 5271 Pentapetalae View MSA
122794839 5272 Eudicot View MSA
122049772 5273 Angiosperm View MSA
121350992 5274 Embryophyte View MSA
123381962 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier