Gene : Brara.B00243 B. rapa FPsc v1.3
Defline:  (1 of 7) PTHR31321:SF23 - PECTINESTERASE PPME1-RELATED Genomic Order:  243
Name:  ? Brara.B00243 Secondary Identifier:  ? PAC:30608792
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
BrapaFPsc PWY-1081 Brassica rapa FPsc pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.B00243 0.5kb upstream 0.5kb upstream 2410 true A02: 1180446-1182855 Brassica rapa FPsc
Brara.B00243 0.5kb upstream 0.5kb upstream 500 false A02: 1180446-1180945 Brassica rapa FPsc
Brara.B00243 0.5kb downstream 0.5kb downstream 2410 true A02: 1180946-1183355 Brassica rapa FPsc
Brara.B00243 0.5kb downstream 0.5kb downstream 500 false A02: 1182856-1183355 Brassica rapa FPsc
Brara.B00243 1.0kb upstream 1.0kb upstream 2910 true A02: 1179946-1182855 Brassica rapa FPsc
Brara.B00243 1.0kb upstream 1.0kb upstream 1000 false A02: 1179946-1180945 Brassica rapa FPsc
Brara.B00243 1.0kb downstream 1.0kb downstream 2910 true A02: 1180946-1183855 Brassica rapa FPsc
Brara.B00243 1.0kb downstream 1.0kb downstream 1000 false A02: 1182856-1183855 Brassica rapa FPsc
Brara.B00243 2.0kb upstream 2.0kb upstream 3910 true A02: 1178946-1182855 Brassica rapa FPsc
Brara.B00243 2.0kb upstream 2.0kb upstream 2000 false A02: 1178946-1180945 Brassica rapa FPsc
Brara.B00243 2.0kb downstream 2.0kb downstream 3910 true A02: 1180946-1184855 Brassica rapa FPsc
Brara.B00243 2.0kb downstream 2.0kb downstream 2000 false A02: 1182856-1184855 Brassica rapa FPsc
Brara.B00243 5.0kb upstream 5.0kb upstream 6910 true A02: 1175946-1182855 Brassica rapa FPsc
Brara.B00243 5.0kb upstream 5.0kb upstream 5000 false A02: 1175946-1180945 Brassica rapa FPsc
Brara.B00243 5.0kb downstream 5.0kb downstream 6910 true A02: 1180946-1187855 Brassica rapa FPsc
Brara.B00243 5.0kb downstream 5.0kb downstream 5000 false A02: 1182856-1187855 Brassica rapa FPsc
Brara.B00243 10.0kb upstream 10.0kb upstream 11910 true A02: 1170946-1182855 Brassica rapa FPsc
Brara.B00243 10.0kb upstream 10.0kb upstream 10000 false A02: 1170946-1180945 Brassica rapa FPsc
Brara.B00243 10.0kb downstream 10.0kb downstream 11910 true A02: 1180946-1192855 Brassica rapa FPsc
Brara.B00243 10.0kb downstream 10.0kb downstream 10000 false A02: 1182856-1192855 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122345097 5261 Brassicaceae Singleton cluster - no MSA
123785003 5264 Brassicales-Malvales Singleton cluster - no MSA
124350112 5266 SBM View MSA
124253324 5268 Malvidae View MSA
124071696 5270 Rosid View MSA
123740013 5271 Pentapetalae View MSA
122792940 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier